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杨树会根据基因型和一天中的时间,以依赖的方式重新配置转录组和代谢组以应对干旱。

Poplar trees reconfigure the transcriptome and metabolome in response to drought in a genotype- and time-of-day-dependent manner.

作者信息

Hamanishi Erin T, Barchet Genoa L H, Dauwe Rebecca, Mansfield Shawn D, Campbell Malcolm M

机构信息

Faculty of Forestry, University of Toronto, 33 Willcocks St., Toronto, ON, M5S 3B2, Canada.

Centre for the Analysis of Genome Evolution and Function, University of Toronto, 25 Willcocks St., Toronto, ON, M5S 3B2, Canada.

出版信息

BMC Genomics. 2015 Apr 21;16(1):329. doi: 10.1186/s12864-015-1535-z.

Abstract

BACKGROUND

Drought has a major impact on tree growth and survival. Understanding tree responses to this stress can have important application in both conservation of forest health, and in production forestry. Trees of the genus Populus provide an excellent opportunity to explore the mechanistic underpinnings of forest tree drought responses, given the growing molecular resources that are available for this taxon. Here, foliar tissue of six water-deficit stressed P. balsamifera genotypes was analysed for variation in the metabolome in response to drought and time of day by using an untargeted metabolite profiling technique, gas chromatography/mass-spectrometry (GC/MS).

RESULTS

Significant variation in the metabolome was observed in response the imposition of water-deficit stress. Notably, organic acid intermediates such as succinic and malic acid had lower concentrations in leaves exposed to drought, whereas galactinol and raffinose were found in increased concentrations. A number of metabolites with significant difference in accumulation under water-deficit conditions exhibited intraspecific variation in metabolite accumulation. Large magnitude fold-change accumulation was observed in three of the six genotypes. In order to understand the interaction between the transcriptome and metabolome, an integrated analysis of the drought-responsive transcriptome and the metabolome was performed. One P. balsamifera genotype, AP-1006, demonstrated a lack of congruence between the magnitude of the drought transcriptome response and the magnitude of the metabolome response. More specifically, metabolite profiles in AP-1006 demonstrated the smallest changes in response to water-deficit conditions.

CONCLUSIONS

Pathway analysis of the transcriptome and metabolome revealed specific genotypic responses with respect to primary sugar accumulation, citric acid metabolism, and raffinose family oligosaccharide biosynthesis. The intraspecific variation in the molecular strategies that underpin the responses to drought among genotypes may have an important role in the maintenance of forest health and productivity.

摘要

背景

干旱对树木生长和存活有重大影响。了解树木对这种胁迫的反应在森林健康保护和商品林经营中都具有重要应用价值。鉴于杨树属有越来越多的分子资源,杨树为探索林木干旱反应的机制基础提供了绝佳机会。在此,通过使用非靶向代谢物分析技术气相色谱/质谱联用仪(GC/MS),对六种水分亏缺胁迫下的香脂杨基因型的叶片组织进行分析,以研究其代谢组对干旱和一天中不同时间的响应变化。

结果

观察到代谢组因水分亏缺胁迫的施加而发生显著变化。值得注意的是,诸如琥珀酸和苹果酸等有机酸中间体在遭受干旱的叶片中浓度较低,而半乳糖醇和棉子糖的浓度则有所增加。许多在水分亏缺条件下积累有显著差异的代谢物在种内代谢物积累上表现出变异。在六种基因型中的三种中观察到了大幅度的倍数变化积累。为了理解转录组与代谢组之间的相互作用,对干旱响应转录组和代谢组进行了综合分析。一种香脂杨基因型AP - 1006在干旱转录组反应幅度与代谢组反应幅度之间表现出不一致。更具体地说,AP - 1006中的代谢物谱在对水分亏缺条件的响应中变化最小。

结论

转录组和代谢组的通路分析揭示了在初级糖积累、柠檬酸代谢和棉子糖家族寡糖生物合成方面的特定基因型反应。基因型间对干旱反应的分子策略中的种内变异可能在维持森林健康和生产力方面具有重要作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/592d/4437445/2a1ac4a28fcc/12864_2015_1535_Fig1_HTML.jpg

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