Agrawal Smriti A, Anand Deepti, Siddam Archana D, Kakrana Atul, Dash Soma, Scheiblin David A, Dang Christine A, Terrell Anne M, Waters Stephanie M, Singh Abhyudai, Motohashi Hozumi, Yamamoto Masayuki, Lachke Salil A
Department of Biological Sciences, University of Delaware, Newark, DE, 19716, USA.
Hum Genet. 2015 Jul;134(7):717-35. doi: 10.1007/s00439-015-1554-5. Epub 2015 Apr 21.
Although majority of the genes linked to early-onset cataract exhibit lens fiber cell-enriched expression, our understanding of gene regulation in these cells is limited to function of just eight transcription factors and largely in the context of crystallins. We report on small Maf transcription factors Mafg and Mafk as regulators of several non-crystallin human cataract-associated genes in fiber cells and establish their significance to this disease. We applied a bioinformatics tool for cataract gene discovery iSyTE to identify Mafg and its co-regulators in the lens, and generated various null-allelic combinations of Mafg:Mafk mouse mutants for phenotypic and molecular analysis. By age 4 months, Mafg-/-:Mafk+/- mutants exhibit lens defects that progressively develop into cataract. High-resolution phenotypic characterization of Mafg-/-:Mafk+/- mouse lens reveals severely disorganized fiber cells, while microarray-based expression profiling identifies 97 differentially regulated genes (DRGs). Integrative analysis of Mafg-/-:Mafk+/- lens-DRGs with (1) binding motifs and genomic targets of small Mafs and their regulatory partners, (2) iSyTE lens expression data, and (3) interactions between DRGs in the String database, unravel a detailed small Maf regulatory network in the lens, several nodes of which are linked to cataract. This approach identifies 36 high-priority candidates from the original 97 DRGs. Significantly, 8/36 (22%) DRGs are associated with cataracts in human (GSTO1, MGST1, SC4MOL, UCHL1) or mouse (Aldh3a1, Crygf, Hspb1, Pcbd1), suggesting a multifactorial etiology that includes oxidative stress and misregulation of sterol synthesis. These data identify Mafg and Mafk as new cataract-associated candidates and define their function in regulating largely non-crystallin genes linked to human cataract.
尽管大多数与早发性白内障相关的基因在晶状体纤维细胞中呈现出高表达,但我们对这些细胞中基因调控的了解仅限于8种转录因子的功能,且主要是在晶状体蛋白的背景下。我们报道了小Maf转录因子Mafg和Mafk作为纤维细胞中几种非晶状体蛋白的人类白内障相关基因的调节因子,并确定了它们在这种疾病中的重要性。我们应用一种用于白内障基因发现的生物信息学工具iSyTE来鉴定晶状体中的Mafg及其共调节因子,并生成了Mafg:Mafk小鼠突变体的各种无效等位基因组合用于表型和分子分析。到4个月大时,Mafg-/-:Mafk+/-突变体表现出晶状体缺陷,并逐渐发展为白内障。对Mafg-/-:Mafk+/-小鼠晶状体的高分辨率表型特征分析显示纤维细胞严重紊乱,而基于微阵列的表达谱分析确定了97个差异调节基因(DRG)。对Mafg-/-:Mafk+/-晶状体-DRG与(1)小Maf及其调节伙伴的结合基序和基因组靶点、(2)iSyTE晶状体表达数据以及(3)String数据库中DRG之间的相互作用进行综合分析,揭示了晶状体中一个详细的小Maf调节网络,其中几个节点与白内障有关。这种方法从最初的97个DRG中确定了36个高优先级候选基因。值得注意的是,36个DRG中有8个(22%)与人类(GSTO1、MGST1、SC4MOL、UCHL1)或小鼠(Aldh3a1、Crygf、Hspb1、Pcbd1)的白内障相关,提示了一种包括氧化应激和甾醇合成失调在内的多因素病因。这些数据确定Mafg和Mafk为新的白内障相关候选基因,并定义了它们在调节与人类白内障相关的主要非晶状体蛋白基因中的功能。