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南极硬骨鱼补体系统C3基因的进化

Evolution of the complement system C3 gene in Antarctic teleosts.

作者信息

Melillo Daniela, Varriale Sonia, Giacomelli Stefano, Natale Lenina, Bargelloni Luca, Oreste Umberto, Pinto Maria Rosaria, Coscia Maria Rosaria

机构信息

Department of Biology and Evolution of Marine Organisms, Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Napoli (SZN), Italy.

Institute of Protein Biochemistry, CNR, Via Pietro Castellino 111, 80131 Napoli, Italy.

出版信息

Mol Immunol. 2015 Aug;66(2):299-309. doi: 10.1016/j.molimm.2015.03.247. Epub 2015 Apr 21.

Abstract

Notothenioidei are typical Antarctic teleosts evolved to adapt to the very low temperatures of the Antarctic seas. Aim of the present paper is to investigate sequence and structure of C3, the third component of the complement system of the notothenioid Trematomus bernacchii and Chionodraco hamatus. We determined the complete nucleotide sequence of two C3 isoforms of T. bernacchii and a single C3 isoform of C. hamatus. These sequences were aligned against other homologous teleost sequences to check for the presence of diversifying selection. Evidence for positive selection was observed in the evolutionary lineage of Antarctic teleost C3 sequences, especially in that of C. hamatus, the most recently diverged species. Adaptive selection affected numerous amino acid positions including three residues located in the anaphylatoxin domain. In an attempt to evaluate the link between sequence variants and specific structural features, we constructed molecular models of Antarctic teleost C3s, of their proteolytic fragments C3b and C3a, and of the corresponding molecules of the phylogenetically related temperate species Epinephelus coioides, using human crystallographic structures as templates. Subsequently, we compared dynamic features of these models by molecular dynamics simulations and found that the Antarctic C3s models show higher flexibility, which likely allows for more pronounced movements of both the TED domain in C3b and the carboxyl-terminal region of C3a. As such dynamic features are associated to positively selected sites, it appears that Antarctic teleost C3 molecules positively evolved toward an increased flexibility, to cope with low kinetic energy levels of the Antarctic marine environment.

摘要

南极鱼亚目是典型的南极硬骨鱼,它们进化以适应南极海洋的极低温度。本文的目的是研究南极鱼亚目伯氏南极鱼(Trematomus bernacchii)和多斑雪冰鱼(Chionodraco hamatus)补体系统第三成分C3的序列和结构。我们测定了伯氏南极鱼两种C3亚型以及多斑雪冰鱼一种C3亚型的完整核苷酸序列。将这些序列与其他同源硬骨鱼序列进行比对,以检查是否存在多样化选择。在南极硬骨鱼C3序列的进化谱系中观察到正选择的证据,特别是在最近分化的物种多斑雪冰鱼中。适应性选择影响了许多氨基酸位置,包括位于过敏毒素结构域的三个残基。为了评估序列变异与特定结构特征之间的联系,我们以人类晶体结构为模板,构建了南极硬骨鱼C3及其蛋白水解片段C3b和C3a以及系统发育相关的温带物种鞍带石斑鱼(Epinephelus coioides)相应分子的分子模型。随后,我们通过分子动力学模拟比较了这些模型的动态特征,发现南极C3模型显示出更高的灵活性,这可能使C3b中的TED结构域和C3a的羧基末端区域都有更明显的移动。由于这种动态特征与正选择位点相关,看来南极硬骨鱼C3分子正向更高的灵活性进化,以应对南极海洋环境的低动能水平。

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