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建立用于预测人类西尼罗河病毒发病率的早期预警系统。

Towards an early warning system for forecasting human west nile virus incidence.

作者信息

Manore Carrie A, Davis Justin K, Christofferson Rebecca C, Wesson Dawn M, Hyman James M, Mores Christopher N

机构信息

Center for Computational Science, Tulane University, New Orleans, Louisiana, USA.

School of Public Health and Tropical Medicine, Tulane University, New Orleans, Louisiana, USA.

出版信息

PLoS Curr. 2014 May 30;6:ecurrents.outbreaks.f0b3978230599a56830ce30cb9ce0500. doi: 10.1371/currents.outbreaks.f0b3978230599a56830ce30cb9ce0500.

DOI:10.1371/currents.outbreaks.f0b3978230599a56830ce30cb9ce0500
PMID:25914857
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4398566/
Abstract

We have identified environmental and demographic variables, available in January, that predict the relative magnitude and spatial distribution of West Nile virus (WNV) for the following summer. The yearly magnitude and spatial distribution for WNV incidence in humans in the United States (US) have varied wildly in the past decade. Mosquito control measures are expensive and having better estimates of the expected relative size of a future WNV outbreak can help in planning for the mitigation efforts and costs. West Nile virus is spread primarily between mosquitoes and birds; humans are an incidental host. Previous efforts have demonstrated a strong correlation between environmental factors and the incidence of WNV. A predictive model for human cases must include both the environmental factors for the mosquito-bird epidemic and an anthropological model for the risk of humans being bitten by a mosquito. Using weather data and demographic data available in January for every county in the US, we use logistic regression analysis to predict the probability that the county will have at least one WNV case the following summer. We validate our approach and the spatial and temporal WNV incidence in the US from 2005 to 2013. The methodology was applied to forecast the 2014 WNV incidence in late January 2014. We find the most significant predictors for a county to have a case of WNV to be the mean minimum temperature in January, the deviation of this minimum temperature from the expected minimum temperature, the total population of the county, publicly available samples of local bird populations, and if the county had a case of WNV the previous year.

摘要

我们已经确定了1月份可用的环境和人口统计学变量,这些变量可预测次年夏季西尼罗河病毒(WNV)的相对规模和空间分布。在过去十年中,美国人类WNV发病率的年度规模和空间分布变化很大。蚊虫控制措施成本高昂,更好地估计未来WNV疫情的预期相对规模有助于规划缓解措施和成本。西尼罗河病毒主要在蚊子和鸟类之间传播;人类是偶然宿主。先前的研究表明环境因素与WNV发病率之间存在很强的相关性。人类病例的预测模型必须既包括蚊鸟疫情的环境因素,也包括人类被蚊子叮咬风险的人类学模型。利用美国每个县1月份可用的天气数据和人口数据,我们使用逻辑回归分析来预测该县次年夏季至少有一例WNV病例的概率。我们验证了我们的方法以及2005年至2013年美国WNV发病率的时空情况。该方法被应用于预测2014年1月下旬2014年的WNV发病率。我们发现,一个县出现WNV病例的最显著预测因素是1月份的平均最低温度、该最低温度与预期最低温度的偏差、该县的总人口、当地鸟类种群的公开可用样本,以及该县前一年是否有WNV病例。

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引用本文的文献

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2
Dynamics of data availability in disease modeling: An example evaluating the trade-offs of ultra-fine-scale factors applied to human West Nile virus disease models in the Chicago area, USA.疾病建模中数据可用性的动态变化:以美国芝加哥地区人类西尼罗河病毒疾病模型为例,评估超精细尺度因素的权衡取舍。
PLoS One. 2021 May 19;16(5):e0251517. doi: 10.1371/journal.pone.0251517. eCollection 2021.
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本文引用的文献

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West Nile virus impacts in American crow populations are associated with human land use and climate.西尼罗河病毒对美洲乌鸦种群的影响与人类土地利用和气候有关。
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The roles of mosquito and bird communities on the prevalence of West Nile virus in urban wetland and residential habitats.蚊子和鸟类群落对城市湿地及居住栖息地中西尼罗河病毒流行率的作用。
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一种用于在疟疾时间序列模型中识别空间变化环境驱动因素的遗传算法。
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Notes from the Field: An Outbreak of West Nile Virus - Arizona, 2019.现场记录:2019年亚利桑那州西尼罗河病毒疫情
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Effects of Scale on Modeling West Nile Virus Disease Risk.规模对西尼罗河病毒病风险建模的影响。
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Seasonal temperatures and hydrological conditions improve the prediction of West Nile virus infection rates in Culex mosquitoes and human case counts in New York and Connecticut.季节温度和水文条件改善了对纽约和康涅狄格州库蚊和人类病例数的西尼罗河病毒感染率的预测。
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Forecasting Zoonotic Infectious Disease Response to Climate Change: Mosquito Vectors and a Changing Environment.预测人畜共患传染病对气候变化的应对:蚊媒与不断变化的环境
Vet Sci. 2019 May 6;6(2):40. doi: 10.3390/vetsci6020040.
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Limited spillover to humans from West Nile Virus viremic birds in Atlanta, Georgia.西尼罗河病毒血症鸟类在佐治亚州亚特兰大对人类的有限传播。
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The 2012 West Nile encephalitis epidemic in Dallas, Texas.2012 年德克萨斯州达拉斯西尼罗河脑炎疫情。
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Am J Epidemiol. 2013 Sep 1;178(5):829-35. doi: 10.1093/aje/kwt046. Epub 2013 Jul 3.
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Sequence analyses of 2012 West Nile virus isolates from Texas fail to associate viral genetic factors with outbreak magnitude.序列分析 2012 年来自德克萨斯州的西尼罗河病毒分离株未能将病毒遗传因素与疫情规模联系起来。
Am J Trop Med Hyg. 2013 Aug;89(2):205-210. doi: 10.4269/ajtmh.13-0140. Epub 2013 Jul 1.
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