从丛林到实验室:年度新热鲃鱼作为生物学的新型模式系统。
From the bush to the bench: the annual Nothobranchius fishes as a new model system in biology.
机构信息
Bio@SNS, Scuola Normale Superiore, Department of Neurosciences, Piazza dei Cavalieri 7, 56126 Pisa, Italy.
Fritz Lipmann Institute for Age Research, Leibniz Institute, Beutenbergstr. 11, D-07745, Jena, Germany.
出版信息
Biol Rev Camb Philos Soc. 2016 May;91(2):511-33. doi: 10.1111/brv.12183. Epub 2015 Apr 28.
African annual fishes from the genus Nothobranchius are small teleosts that inhabit temporary water bodies subject to annual desiccation due to the alternation of the monsoon seasons. Given their unique biology, these fish have emerged as a model taxon in several biological disciplines. Their increasing popularity stems from the extremely short lifespan that is the result of their specific life-history adaptations and is retained under laboratory conditions. Nothobranchius furzeri, the most popular laboratory species, is the vertebrate species with the shortest lifespan recorded in captivity. In the laboratory, adults of different Nothobranchius species and populations live between 3 and 18 months and, notably, there is a negative correlation between the captive lifespan of a species and the aridity of their habitat. Their short lifespan is coupled to rapid age-dependent functional decline and expression of cellular and molecular changes comparable to those observed in other vertebrates, including humans. The recent development of transgenesis in this species makes it possible to insert specific constructs into their genome, and the establishment of transgenic lines is facilitated by their very rapid generation time, which can be as short as 1 month. This makes Nothobranchius species particularly suited for investigating biological and molecular aspects of ageing and ageing-associated dysfunctions. At the same time, they also represent a unique model taxon to investigate the evolution of life-history adaptations and their genetic architecture. We review their natural history, including phylogenetic relationships, distribution in relation to habitat conditions and natural selection for differential longevity, population structure and demography, and life cycle with emphasis on diapause that may occur at three stages during embryonic development. We further critically evaluate their use as a laboratory model for understanding the evolution of a rapid ageing rate and its consequences for other life-history traits, for cellular, molecular and integrative traits associated with the ageing process, high incidence of neoplasias, their utility for genome-wide gene-expression studies, and as a model for quantitative genetics. We summarize recent achievements in fostering Nothobranchius species as a widely applicable model system, including an annotated transcriptome, successful transgenesis, and existence of viable inbred lines. We compare the conditions they experience in the wild and in captivity and suggest that they are an ideal taxon to investigate natural genetic variation in a laboratory setting. We conclude that Nothobranchius species - and N. furzeri in particular - could become a unique model taxon that bridges interests in ecological and biomedical research. We hope that a conceptual and methodological integration of these two branches of biology will provide important new insights.
非洲季节性鱼类,隶属于非洲攀鲈属,是小型硬骨鱼,栖息于季节性季风变化导致的暂时性水体中,这些水体每年都会干涸。由于其独特的生物学特性,这些鱼类已成为多个生物学学科的典型分类群。它们越来越受欢迎,是因为其特殊的生活史适应性导致的极短寿命,并且在实验室条件下也能保持这种寿命。最受欢迎的实验室物种非洲攀鲈,是圈养中寿命最短的脊椎动物。在实验室中,不同的非洲攀鲈物种和种群的成年个体的寿命在 3 到 18 个月之间,值得注意的是,物种的圈养寿命与其栖息地的干旱程度呈负相关。它们的短寿命与快速的年龄相关的功能下降以及与其他脊椎动物(包括人类)观察到的细胞和分子变化有关。该物种最近在转基因方面的发展使其能够将特定的构建体插入其基因组中,并且由于其非常快速的世代时间(短至 1 个月),建立转基因系变得更加容易。这使得非洲攀鲈物种特别适合研究衰老和衰老相关功能障碍的生物学和分子方面。同时,它们也是研究生活史适应性及其遗传结构进化的独特模式分类群。我们回顾了它们的自然历史,包括系统发育关系、分布与栖息地条件的关系以及对不同长寿的自然选择、种群结构和人口统计学,以及强调胚胎发育过程中可能发生在三个阶段的休眠的生命周期。我们进一步批判性地评估了它们作为理解快速衰老率进化及其对其他生活史特征的影响的实验室模型的用途,用于与衰老过程相关的细胞、分子和综合特征、高发肿瘤、用于全基因组基因表达研究的用途,以及作为定量遗传学的模型。我们总结了促进非洲攀鲈物种作为广泛适用的模型系统的最新成就,包括注释的转录组、成功的转基因以及可行的近交系的存在。我们比较了它们在野外和圈养中的条件,并提出它们是一个理想的分类群,可以在实验室环境中研究自然遗传变异。我们的结论是,非洲攀鲈物种——特别是非洲攀鲈——可能成为一个独特的模式分类群,将生态和生物医学研究的兴趣联系起来。我们希望这两个生物学分支的概念和方法的整合将提供重要的新见解。