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InteractiVenn:一款基于网络的通过维恩图进行集合分析的工具。

InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams.

作者信息

Heberle Henry, Meirelles Gabriela Vaz, da Silva Felipe R, Telles Guilherme P, Minghim Rosane

机构信息

Universidade de São Paulo, Instituto de Ciências Matemáticas e de Computação, Av. Trabalhador São-carlense, 400, São Carlos SP, Brazil.

Laboratório Nacional de Biociências, Campinas SP, Caixa Postal 6192, Brazil.

出版信息

BMC Bioinformatics. 2015 May 22;16(1):169. doi: 10.1186/s12859-015-0611-3.

Abstract

BACKGROUND

Set comparisons permeate a large number of data analysis workflows, in particular workflows in biological sciences. Venn diagrams are frequently employed for such analysis but current tools are limited.

RESULTS

We have developed InteractiVenn, a more flexible tool for interacting with Venn diagrams including up to six sets. It offers a clean interface for Venn diagram construction and enables analysis of set unions while preserving the shape of the diagram. Set unions are useful to reveal differences and similarities among sets and may be guided in our tool by a tree or by a list of set unions. The tool also allows obtaining subsets' elements, saving and loading sets for further analyses, and exporting the diagram in vector and image formats. InteractiVenn has been used to analyze two biological datasets, but it may serve set analysis in a broad range of domains.

CONCLUSIONS

InteractiVenn allows set unions in Venn diagrams to be explored thoroughly, by consequence extending the ability to analyze combinations of sets with additional observations, yielded by novel interactions between joined sets. InteractiVenn is freely available online at: www.interactivenn.net .

摘要

背景

集合比较贯穿于大量的数据分析工作流程中,尤其是生物科学领域的工作流程。维恩图经常用于此类分析,但目前的工具存在局限性。

结果

我们开发了InteractiVenn,这是一种更灵活的工具,用于与包含多达六个集合的维恩图进行交互。它为维恩图构建提供了简洁的界面,并能在保留图形状的同时对集合并集进行分析。集合并集有助于揭示集合之间的差异和相似性,在我们的工具中可以通过树状结构或集合并集列表来引导。该工具还允许获取子集的元素、保存和加载集合以进行进一步分析,以及以矢量和图像格式导出图表。InteractiVenn已用于分析两个生物学数据集,但它可服务于广泛领域的集合分析。

结论

InteractiVenn允许对维恩图中的集合并集进行全面探索,从而扩展了通过合并集合之间的新交互产生的额外观察结果来分析集合组合的能力。InteractiVenn可在以下网址免费在线获取:www.interactivenn.net

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/56e1/4455604/678f49b15f95/12859_2015_611_Fig1_HTML.jpg

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