Department of Advanced Medical Initiatives, JST-CREST, Faculty of Medicine, Kyushu University, Fukuoka 812-8582, Japan.
Bioinformatics. 2015 Sep 15;31(18):3046-7. doi: 10.1093/bioinformatics/btv322. Epub 2015 May 20.
Aggregation plots are frequently used to evaluate signal distributions at user-interested points in ChIP-Seq data analysis. agplus, a new and simple command-line tool, enables rapid and flexible generation of text tables tailored for aggregation plots from which users can easily design multiple groups based on user-definitions such as regulatory regions or transcription initiation sites.
This software is implemented in Ruby, supported on Linux and Mac OSX, and freely available at http://github.com/kazumits/agplus
在 ChIP-Seq 数据分析中,聚合图常用于评估用户感兴趣点的信号分布。agplus 是一个新的简单命令行工具,它可以快速灵活地生成适合聚合图的文本表,用户可以根据自己的定义(如调控区域或转录起始位点)轻松设计多个组。
该软件是用 Ruby 编写的,支持 Linux 和 Mac OSX,可在 http://github.com/kazumits/agplus 上免费获得。