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结核分枝杆菌3型新西兰药物敏感分离株的基因组序列草图

Draft Genome Sequence of a Drug-Susceptible New Zealand Isolate of Mycobacterium tuberculosis Lineage 3.

作者信息

Mac Aogáin Micheál, Bower James E, Basu Indira, Freeman Joshua T, O'Toole Ronan F

机构信息

Department of Clinical Microbiology, School of Medicine, Trinity College Dublin, St. James's Hospital, Dublin, Ireland.

LabPlus, Auckland City Hospital, Auckland, New Zealand.

出版信息

Genome Announc. 2015 May 21;3(3):e00499-15. doi: 10.1128/genomeA.00499-15.

DOI:10.1128/genomeA.00499-15
PMID:25999550
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4440964/
Abstract

We report here the draft whole-genome sequence of a drug-susceptible lineage 3 (East-African Indian) isolate of Mycobacterium tuberculosis from New Zealand (NZ3DS1) and compare it to a multidrug-resistant lineage 3 isolate (NZ3MDR1) with an identical 24-locus mycobacterial interspersed repetitive-unit-variable-number tandem-repeat profile.

摘要

我们在此报告来自新西兰的一株药物敏感的3型（东非-印度型）结核分枝杆菌菌株（NZ3DS1）的全基因组序列草图，并将其与一株具有相同24位点分枝杆菌插入重复单元可变数目串联重复序列图谱的耐多药3型菌株（NZ3MDR1）进行比较。

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本文引用的文献

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Drug-resistant tuberculosis can be predicted by Mycobacterial interspersed repetitive unit locus.耐多药结核病可以通过分枝杆菌间隔重复单元位点预测。
Front Microbiol. 2015 Feb 24;6:147. doi: 10.3389/fmicb.2015.00147. eCollection 2015.
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Draft Genome Sequence of a Multidrug-Resistant New Zealand Isolate of Mycobacterium tuberculosis Lineage 3.结核分枝杆菌3型多重耐药新西兰分离株的基因组序列草图
Genome Announc. 2014 Oct 16;2(5):e01017-14. doi: 10.1128/genomeA.01017-14.
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Predicting extensively drug-resistant Mycobacterium tuberculosis phenotypes with genetic mutations.利用基因突变预测广泛耐药结核分枝杆菌表型
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Whole-genome sequencing for rapid susceptibility testing of M. tuberculosis.用于结核分枝杆菌快速药敏试验的全基因组测序
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Phylogenetic lineages of tuberculosis isolates in New Zealand and their association with patient demographics.新西兰结核分枝杆菌分离株的系统发育谱系及其与患者人口统计学特征的关系。
Int J Tuberc Lung Dis. 2013 Jul;17(7):892-7. doi: 10.5588/ijtld.12.0795. Epub 2013 Apr 30.
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A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3.一个用于注释和预测单核苷酸多态性影响的程序，即SnpEff：黑腹果蝇品系w1118、iso-2、iso-3基因组中的单核苷酸多态性。
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Bioinformatics. 2010 Mar 1;26(5):589-95. doi: 10.1093/bioinformatics/btp698. Epub 2010 Jan 15.
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Major Mycobacterium tuberculosis lineages associate with patient country of origin.主要的结核分枝杆菌谱系与患者的原籍国相关。
J Clin Microbiol. 2009 Apr;47(4):1119-28. doi: 10.1128/JCM.02142-08. Epub 2009 Feb 11.
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Proc Natl Acad Sci U S A. 2006 Feb 21;103(8):2869-73. doi: 10.1073/pnas.0511240103. Epub 2006 Feb 13.