Khodadadi S, Sokolov A P
Faculty of Applied Sciences, Delft University of Technology, Delft, The Netherlands.
Soft Matter. 2015 Jul 7;11(25):4984-98. doi: 10.1039/c5sm00636h.
We present an overview of protein dynamics based mostly on results of neutron scattering, dielectric relaxation spectroscopy and molecular dynamics simulations. We identify several major classes of protein motions on the time scale from faster than picoseconds to several microseconds, and discuss the coupling of these processes to solvent dynamics. Our analysis suggests that the microsecond backbone relaxation process might be the main structural relaxation of the protein that defines its glass transition temperature, while faster processes present some localized secondary relaxations. Based on the overview, we formulate a general picture of protein dynamics and discuss the challenges in this field.
我们主要基于中子散射、介电弛豫光谱和分子动力学模拟的结果,对蛋白质动力学进行概述。我们确定了从皮秒以下到几微秒时间尺度上蛋白质运动的几大类,并讨论了这些过程与溶剂动力学的耦合。我们的分析表明,微秒级的主链弛豫过程可能是定义其玻璃化转变温度的蛋白质主要结构弛豫,而较快的过程则呈现一些局部二级弛豫。基于此概述,我们阐述了蛋白质动力学的总体情况,并讨论了该领域的挑战。