恶臭假单胞菌CBB5的基因组序列草图，该菌株能够将咖啡因作为唯一碳源和氮源加以利用。
Draft Genome Sequence of the Bacterium Pseudomonas putida CBB5, Which Can Utilize Caffeine as a Sole Carbon and Nitrogen Source.
作者信息
Quandt Erik M, Summers Ryan M, Subramanian Mani V, Barrick Jeffrey E
机构信息
Center for Systems and Synthetic Biology, Center for Computational Biology and Bioinformatics, Institute for Cellular and Molecular Biology, Department of Molecular Biosciences, The University of Texas at Austin, Austin, Texas, USA.
Department of Chemical and Biological Engineering, The University of Alabama, Tuscaloosa, Alabama, USA.
出版信息
Genome Announc. 2015 Jun 11;3(3):e00640-15. doi: 10.1128/genomeA.00640-15.
Abstract
Pseudomonas putida CBB5 was isolated from soil by enriching for growth on caffeine (1,3,7-trimethylxanthine). The draft genome of this strain is 6.9 Mb, with 5,941 predicted coding sequences. It includes the previously studied Alx gene cluster encoding alkylxanthine N-demethylase enzymes and other genes that enable the degradation of purine alkaloids.
摘要
恶臭假单胞菌CBB5是从土壤中分离出来的，通过在咖啡因（1,3,7-三甲基黄嘌呤）上富集培养获得。该菌株的基因组草图为6.9 Mb，有5941个预测的编码序列。它包括先前研究过的编码烷基黄嘌呤N-脱甲基酶的Alx基因簇以及其他能够降解嘌呤生物碱的基因。
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本文引用的文献
1
A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data.A5-miseq：一种用于从Illumina MiSeq数据组装微生物基因组的更新流程。
Bioinformatics. 2015 Feb 15;31(4):587-9. doi: 10.1093/bioinformatics/btu661. Epub 2014 Oct 22.
2
FLEXBAR-Flexible Barcode and Adapter Processing for Next-Generation Sequencing Platforms.FLEXBAR—用于下一代测序平台的灵活条码和接头处理
Biology (Basel). 2012 Dec 14;1(3):895-905. doi: 10.3390/biology1030895.
3
Degradation of caffeine and related methylxanthines bySerratia marcescens isolated from soil under coffee cultivation.土壤中分离的粘质沙雷氏菌对咖啡因和相关甲基黄嘌呤的降解作用。
Microb Ecol. 1996 Mar;31(2):199-207. doi: 10.1007/BF00167865.
4
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5
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ACS Synth Biol. 2013 Jun 21;2(6):301-7. doi: 10.1021/sb4000146. Epub 2013 Mar 22.
6
The complete genome sequence of the plant growth-promoting bacterium Pseudomonas sp. UW4.植物促生菌 Pseudomonas sp. UW4 的全基因组序列。
PLoS One. 2013;8(3):e58640. doi: 10.1371/journal.pone.0058640. Epub 2013 Mar 13.
7
An integrated pipeline for de novo assembly of microbial genomes.用于从头组装微生物基因组的集成管道。
PLoS One. 2012;7(9):e42304. doi: 10.1371/journal.pone.0042304. Epub 2012 Sep 13.
8
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J Bacteriol. 2009 Jul;191(14):4624-32. doi: 10.1128/JB.00409-09. Epub 2009 May 15.
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