一株能利用咖啡因的细菌——[细菌名称]菌株D384的基因组序列草图
Draft Genome Sequence of a Caffeine-Utilizing Bacterium, sp. Strain D384.
作者信息
Watahiki Saori, Kimura Nobutada
机构信息
Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Japan.
Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan.
出版信息
Genome Announc. 2017 May 18;5(20):e00370-17. doi: 10.1128/genomeA.00370-17.
Abstract
sp. D384 was isolated from forest soil in Japan and is known to utilize caffeine as a sole source of carbon and energy. We report here the 6,835,230-bp genome sequence for this strain, which contains 6,116 predicted coding sequences, including gene operon for alkaloid degradation.
摘要
菌株D384是从日本森林土壤中分离出来的，已知它能将咖啡因作为唯一的碳源和能源。我们在此报告该菌株的6835230碱基对基因组序列，其中包含6116个预测的编码序列，包括生物碱降解基因操纵子。
相似文献
1
Draft Genome Sequence of a Caffeine-Utilizing Bacterium, sp. Strain D384.
Genome Announc. 2017 May 18;5(20):e00370-17. doi: 10.1128/genomeA.00370-17.
2
Draft Genome Sequence of Cupriavidus pauculus Strain KF709, a Biphenyl-Utilizing Bacterium Isolated from Biphenyl-Contaminated Soil.
Genome Announc. 2015 Mar 26;3(2):e00222-15. doi: 10.1128/genomeA.00222-15.
3
Draft Genome Sequence of the Bacterium Pseudomonas putida CBB5, Which Can Utilize Caffeine as a Sole Carbon and Nitrogen Source.
Genome Announc. 2015 Jun 11;3(3):e00640-15. doi: 10.1128/genomeA.00640-15.
4
Draft Genome Sequence of Cupriavidus sp. Strain SK-3, a 4-Chlorobiphenyl- and 4-Clorobenzoic Acid-Degrading Bacterium.
Genome Announc. 2014 Jul 3;2(4):e00664-14. doi: 10.1128/genomeA.00664-14.
5
Draft Genome Sequence of Cupriavidus sp. Strain SK-4, a di-ortho-Substituted Biphenyl-Utilizing Bacterium Isolated from Polychlorinated Biphenyl-Contaminated Sludge.
Genome Announc. 2014 May 22;2(3):e00474-14. doi: 10.1128/genomeA.00474-14.
6
Draft Genome Sequence of Pseudomonas abietaniphila KF717 (NBRC 110669), Isolated from Biphenyl-Contaminated Soil in Japan.
Genome Announc. 2015 Mar 19;3(2):e00059-15. doi: 10.1128/genomeA.00059-15.
7
Draft Genome Sequence of sp. Strain IK-TO18, Isolated from Antimony-Contaminated Sediment.
Microbiol Resour Announc. 2021 Sep 23;10(38):e0072421. doi: 10.1128/MRA.00724-21.
8
Draft Genome Sequence of the Phenol-Degrading Bacterium sp. Strain P-10, Isolated from Trichloroethene-Contaminated Aquifer Soil.
Microbiol Resour Announc. 2018 Nov 8;7(18). doi: 10.1128/MRA.01009-18. eCollection 2018 Nov.
9
High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512.
Stand Genomic Sci. 2015 Apr 11;10:13. doi: 10.1186/1944-3277-10-13. eCollection 2015.
10
Draft Genome Sequence of the Polychlorinated Biphenyl-Degrading Bacterium Cupriavidus basilensis KF708 (NBRC 110671) Isolated from Biphenyl-Contaminated Soil.
Genome Announc. 2015 Mar 19;3(2):e00143-15. doi: 10.1128/genomeA.00143-15.
本文引用的文献
1
KEGG as a reference resource for gene and protein annotation.
Nucleic Acids Res. 2016 Jan 4;44(D1):D457-62. doi: 10.1093/nar/gkv1070. Epub 2015 Oct 17.
2
Heavy metal resistance in Cupriavidus metallidurans CH34 is governed by an intricate transcriptional network.
Biometals. 2011 Dec;24(6):1133-51. doi: 10.1007/s10534-011-9473-y. Epub 2011 Jun 25.
3
The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes.
BMC Bioinformatics. 2008 Sep 19;9:386. doi: 10.1186/1471-2105-9-386.
4
Caffeine, an anthropogenic marker for wastewater comtamination of surface waters.
Environ Sci Technol. 2003 Feb 15;37(4):691-700. doi: 10.1021/es020125z.
Zotero 插件