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硫酸化化合物振动光谱的非谐模拟:应用于糖胺聚糖片段硫酸氨基葡萄糖。

Anharmonic simulations of the vibrational spectrum of sulfated compounds: application to the glycosaminoglycan fragment glucosamine 6-sulfate.

作者信息

Barnes Loïc, Schindler Baptiste, Allouche Abdul-Rahman, Simon Daniel, Chambert Stéphane, Oomens Jos, Compagnon Isabelle

机构信息

Université de Lyon, F-69622, Lyon, France.

出版信息

Phys Chem Chem Phys. 2015 Oct 21;17(39):25705-13. doi: 10.1039/c5cp02079d.

DOI:10.1039/c5cp02079d
PMID:26119005
Abstract

Mid-infrared spectroscopy coupled with mass spectrometry is an appealing tool for the sequencing and structural elucidation of functional modifications in biopolymers, as it offers direct spectroscopic identification of the functionality where the traditional mass spectrometric approach is insufficient. Whereas the gas phase vibrational spectroscopy of peptides (and to a lesser extent saccharides) has been widely investigated, sulfation has attracted much less attention, despite its prevalence in natural polymers. The simulation of the vibrational spectra of such functionalized compounds is however notoriously challenging, which impairs the interpretation of spectroscopic data in terms of structure. Driven by a striking case of such a failure for a sulfated glycosaminoglycan fragment, we elaborate on an original hybrid GVPT2 anharmonic approach. This strategy offers a significantly improved accuracy in the description of the sulfate modes, without the recourse to empirical scaling factors, and with a greatly reduced computational cost which is otherwise prohibitive for molecules of this size. Alternatively, we propose a selection of reasonably accurate harmonic methods with adequate scaling factors optimized on a set of benchmark compounds.

摘要

中红外光谱与质谱联用是用于生物聚合物功能修饰测序和结构解析的一种有吸引力的工具,因为它能在传统质谱方法不足时直接对官能团进行光谱鉴定。尽管肽(以及程度稍低的糖类)的气相振动光谱已得到广泛研究,但硫酸化修饰尽管在天然聚合物中普遍存在,却很少受到关注。然而,此类功能化化合物振动光谱的模拟极具挑战性,这妨碍了从结构角度对光谱数据的解读。受一个硫酸化糖胺聚糖片段模拟失败的突出案例驱动,我们详细阐述了一种原创的混合GVPT2非谐方法。该策略在描述硫酸根模式时显著提高了准确性,无需借助经验缩放因子,且计算成本大幅降低,否则对于这种大小的分子来说计算成本过高。另外,我们提出了一系列合理准确的谐波方法,并在一组基准化合物上优化了适当的缩放因子。

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