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J Pharm Biomed Anal. 2015 Sep 10;113:2-20. doi: 10.1016/j.jpba.2015.04.013. Epub 2015 Apr 25.
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J Proteomics. 2015 Jun 21;124:50-78. doi: 10.1016/j.jprot.2015.04.018. Epub 2015 Apr 24.
3
Imaging active urokinase plasminogen activator in prostate cancer.前列腺癌中活性尿激酶型纤溶酶原激活物的成像。
Cancer Res. 2015 Apr 1;75(7):1225-35. doi: 10.1158/0008-5472.CAN-14-2185. Epub 2015 Feb 11.
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Activity-based protein profiling: recent advances in probe development and applications.基于活性的蛋白质谱分析:探针开发与应用的最新进展
Chembiochem. 2015 Mar 23;16(5):712-24. doi: 10.1002/cbic.201402582. Epub 2015 Feb 4.
5
An alternative method for serum protein depletion/enrichment by precipitation at mildly acidic pH values and low ionic strength.一种在轻度酸性pH值和低离子强度下通过沉淀进行血清蛋白去除/富集的替代方法。
Proteomics. 2015 Jun;15(11):1935-40. doi: 10.1002/pmic.201400257. Epub 2015 Mar 13.
6
Single-cell mass cytometry reveals intracellular survival/proliferative signaling in FLT3-ITD-mutated AML stem/progenitor cells.单细胞质谱流式细胞术揭示了FLT3-ITD突变的急性髓系白血病干/祖细胞中的细胞内存活/增殖信号。
Cytometry A. 2015 Apr;87(4):346-56. doi: 10.1002/cyto.a.22628. Epub 2015 Jan 16.
7
The acute respiratory distress syndrome: from mechanism to translation.急性呼吸窘迫综合征:从机制到转化
J Immunol. 2015 Feb 1;194(3):855-60. doi: 10.4049/jimmunol.1402513.
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Danger signaling in atherosclerosis.动脉粥样硬化中的危险信号。
Circ Res. 2015 Jan 16;116(2):323-40. doi: 10.1161/CIRCRESAHA.116.301135.
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Role of Immunity and Inflammation in the Pathophysiology of Neurodegenerative Diseases.免疫与炎症在神经退行性疾病病理生理学中的作用
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Immunological differences between classical phenothypes of multiple sclerosis.多发性硬化经典表型之间的免疫学差异。
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从基于身份的蛋白质组学向生物活性导向的蛋白质组学转变以发现生物标志物,重点关注PF2D平台。

Transition from identity to bioactivity-guided proteomics for biomarker discovery with focus on the PF2D platform.

作者信息

Ménoret Antoine, Crocker Stephen J, Rodriguez Annabelle, Rathinam Vijay A, Clark Robert B, Vella Anthony T

机构信息

Department of Immunology, University of Connecticut Health Center, Farmington, CT, USA.

Department of Neuroscience, University of Connecticut Health Center, Farmington, CT, USA.

出版信息

Proteomics Clin Appl. 2016 Jan;10(1):8-24. doi: 10.1002/prca.201500029. Epub 2015 Sep 16.

DOI:10.1002/prca.201500029
PMID:26201056
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6644731/
Abstract

Proteomic strategies provide a valuable tool kit to identify proteins involved in diseases. With recent progress in MS technology, high throughput proteomics has accelerated protein identification for potential biomarkers. Numerous biomarker candidates have been identified in several diseases, and many are common among pathologies. An overall strategy that could complement and strengthen the search for biomarkers is combining protein identity with biological outcomes. This review describes an emerging framework of bridging bioactivity to protein identity, exploring the possibility that some biomarkers will have a mechanistic role in the disease process. A review of pulmonary, cardiovascular, and CNS biomarkers will be discussed to demonstrate the utility of combining bioactivity with identification as a means to not only find meaningful biomarkers, but also to uncover functional mediators of disease.

摘要

蛋白质组学策略提供了一套有价值的工具,用于识别与疾病相关的蛋白质。随着质谱技术的最新进展,高通量蛋白质组学加速了对潜在生物标志物的蛋白质识别。在几种疾病中已经鉴定出了大量的生物标志物候选物,其中许多在不同病理中是常见的。一种可以补充和加强生物标志物搜索的总体策略是将蛋白质识别与生物学结果相结合。本综述描述了一个将生物活性与蛋白质识别联系起来的新兴框架,探讨了一些生物标志物在疾病过程中具有机制作用的可能性。将讨论对肺部、心血管和中枢神经系统生物标志物的综述,以证明将生物活性与识别相结合作为一种手段的实用性,不仅可以找到有意义的生物标志物,还可以揭示疾病的功能介质。