Paulownia Research and Development Center of China, Non-timber Forestry Research and Development of CAF, Weiwu Road, Zhengzhou City 450003, China.
Food Resources Education and Research Center, Faculty of Agriculture, Kobe University, Hyogo 675-2103, Japan.
PLoS One. 2015 Aug 7;10(8):e0133686. doi: 10.1371/journal.pone.0133686. eCollection 2015.
Pyrus ussriensis Maxim. is native to the northern part of China, but whose habitats are currently being destroyed by environmental changes and human deforestation. An investigation of population structure and genetic diversity of wild Ussurian pear is a priority in order to acquire fundamental knowledge for conservation. A total of 153 individuals of wild Ussurian pear from the main habitats, Heilongjiang, Jilin, and Inner Mongolia in China, possessed low genetic diversity as a result of habitat fragmentation. The genetic diversity of the populations in Inner Mongolia and north east of Heilongjiang was especially low and there was the possibility of inbreeding. Wild Ussurian pears were divided into 5 groups based on the Bayesian clustering method using 20 nuclear SSRs (nSSRs) and 5 groups by haplotype distributions using 16 chloroplast SSRs (cpSSRs), and the populations in Inner Mongolia and north east of Heilongjiang represented unique genotypes. AMOVA indicated there was a 20.05% variation in nSSRs and a 44.40% variation in cpSSRs among populations. These values are relatively high when compared to those of other tree species. Haplotype E, positioned in the center of the cpSSR analysis network and showed the largest number of connections with other haplotypes, represented the most important haplotype. Inner Mongolia and the north east of Heilongjiang are two areas that need urgent conservation because of their genetic vulnerability and peculiarity. We determined 4 conservation units based on the clustering by nSSRs and cpSSRs, and geographic factor. This information is helpful in deciding the conservation strategies for wild Ussurian pear in China.
砂梨(Pyrus ussuriensis Maxim.)原产于中国北方,但由于环境变化和人类砍伐森林,其栖息地正遭到破坏。因此,调查野生砂梨的种群结构和遗传多样性是保护工作的当务之急,以便为保护工作提供基础认识。
在中国黑龙江、吉林和内蒙古的主要栖息地共采集了 153 株野生砂梨个体,由于生境破碎化,其遗传多样性较低。内蒙古和黑龙江东北部种群的遗传多样性特别低,存在近亲繁殖的可能性。
利用 20 个核 SSR(nSSR)和 16 个叶绿体 SSR(cpSSR)的贝叶斯聚类方法,将野生砂梨分为 5 组,根据单倍型分布将其分为 5 组,内蒙古和黑龙江东北部的种群代表独特的基因型。AMOVA 分析表明,nSSR 中有 20.05%的变异,cpSSR 中有 44.40%的变异存在于种群之间。与其他树种相比,这些值相对较高。cpSSR 分析网络中心的单倍型 E 与其他单倍型的连接数量最多,代表最重要的单倍型。
内蒙古和黑龙江东北部由于遗传脆弱性和独特性,是需要紧急保护的两个地区。我们根据 nSSR 和 cpSSR 聚类以及地理因素确定了 4 个保护单元,这些信息有助于决定中国野生砂梨的保护策略。