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遗传侵蚀的管理:拉齐奥地区(意大利)梨(L.)种质资源的(成功)案例研究。

Management of genetic erosion: The (successful) case study of the pear ( L.) germplasm of the Lazio region (Italy).

作者信息

Draga Samela, Palumbo Fabio, Miracolo Barbagiovanni Immacolata, Pati Francesco, Barcaccia Gianni

机构信息

Department of Agronomy, Food, Natural Resources, Animals and the Environment, University of Padova, Padua, Italy.

ARSIAL, Agenzia Regionale per lo Sviluppo e l'Innovazione dell'Agricoltura del Lazio, Via Rodolfo Lanciani, Roma, Italy.

出版信息

Front Plant Sci. 2023 Jan 9;13:1099420. doi: 10.3389/fpls.2022.1099420. eCollection 2022.

Abstract

L. is an important temperate fruit with high nutritional and economic value. Italy, as the largest pear producer in the EU and second in the world, has a particularly rich germplasm characterized by hundreds of local varieties. The Lazio Region was the first Italian region to start programs focused on safeguarding varieties at risk of extinction and has started a massive census of fruit varieties by combining molecular data and productive-territorial information. In this study, 311 pear accessions collected from the five provinces of the Lazio region were genetically characterized by the means of nine simple sequence repeat (SSR) markers, eight of which were recommended by the European Cooperative Programme for Plant Genetic Resources (ECPGR). The SSR analysis revealed 250 unique genotypes and 14 cases of synonymies, namely, accessions with different names but identical molecular profiles (100% genetic similarity). The microsatellite set showed a high polymorphism information content (PIC; mean PIC=0.77) and an exceptionally high discrimination power (DP = 0.99), making it particularly efficient both for the study of genetic diversity and for the prediction of the degree of ploidy. Notably, 20% of the accessions displayed triallelic profiles (i.e., accessions having ≥2 loci with a third allele), while the remaining accessions were diploids. These results were further confirmed by flow cytometry data analysis. Standardization of the molecular analyses at the national and international levels and harmonization of the SSR sets used for germplasm characterization are of paramount importance for producing molecular profiles useful for registration and variety maintenance.

摘要

梨是一种重要的温带水果,具有很高的营养和经济价值。意大利是欧盟最大的梨生产国,世界排名第二,拥有特别丰富的种质资源,其特点是有数百个地方品种。拉齐奥地区是意大利第一个启动旨在保护濒临灭绝品种项目的地区,并通过结合分子数据和生产地域信息,开始了大规模的水果品种普查。在本研究中,从拉齐奥地区五个省份收集的311份梨种质通过9个简单序列重复(SSR)标记进行了遗传特征分析,其中8个标记是由欧洲植物遗传资源合作计划(ECPGR)推荐的。SSR分析揭示了250个独特的基因型和14个同义情况,即名称不同但分子图谱相同(100%遗传相似性)的种质。微卫星组显示出高多态性信息含量(PIC;平均PIC = 0.77)和极高的鉴别力(DP = 0.99),这使得它在遗传多样性研究和倍性程度预测方面都特别有效。值得注意的是,20%的种质显示出三等位基因图谱(即具有≥2个位点且带有第三个等位基因的种质),而其余种质为二倍体。这些结果通过流式细胞术数据分析得到了进一步证实。在国家和国际层面实现分子分析的标准化以及用于种质特征描述的SSR组的协调统一,对于生成有助于登记和品种维护的分子图谱至关重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8980/9868429/53ec8eca0402/fpls-13-1099420-g001.jpg

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