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火山鞘氨醇单胞菌新种,从熔岩森林土壤中分离得到。

Sphingomonas vulcanisoli sp. nov., isolated from soil of a lava forest.

作者信息

Lee Keun Chul, Kim Kwang Kyu, Kim Jong-Shik, Kim Dae-Shin, Ko Suk-Hyung, Yang Seung-Hoon, Kim Song-Gun, Lee Jung-Sook

机构信息

Korean Collection for Type Cultures, Korea Research Institute of Bioscience and Biotechnology, 125 Gwahak-ro, Yuseong-gu, Daejeon 305-806, Republic of Korea.

Gyeongbuk Institute for Marine Bioindustry, Uljin, 767-813, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2015 Oct;65(10):3320-3325. doi: 10.1099/ijsem.0.000414. Epub 2015 Jul 1.

Abstract

A Gram-stain-negative, non-motile, yellow-pigmented and rod-shaped bacterial strain, designated SN6-13T, was isolated from soil of the Gotjawal, lava forest, located in Jeju, Republic of Korea. Cells of strain SN6-13T were oxidase- and catalase-positive. The isolate contained Q-10 as the predominant isoprenoid quinone, summed feature 8 (C18 : 1ω7c and/or C18 : 1ω6c) and C16 : 0 as the major fatty acids, sym-homospermidine as the major polyamine and diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine, sphingoglycolipid, ninhydrinphosphatidylglycerol and two unidentified aminophospholipids as the polar lipids. The DNA G+C content was 64.6 mol%. In phylogenetic analyses based on 16S rRNA gene sequencing, strain SN6-13T was most closely related to Sphingomonas laterariae LNB2T (95.4 % sequence similarity) and formed a separate lineage in the genus Sphingomonas. Based on phenotypic, chemotaxonomic and phylogenetic characteristics, it is concluded that strain SN6-13T represents a novel species of the genus Sphingomonas, for which the name Sphingomonas vulcanisoli sp. nov. is proposed. The type strain is SN6-13T ( = KCTC 42454T = CECT 8804T).

摘要

从韩国济州岛熔岩森林汉拿山土壤中分离出一株革兰氏阴性、无运动性、产黄色色素的杆状细菌,命名为SN6-13T。SN6-13T菌株的细胞氧化酶和过氧化氢酶呈阳性。该分离株以Q-10作为主要类异戊二烯醌,以总和特征8(C18:1ω7c和/或C18:1ω6c)和C16:0作为主要脂肪酸,以对称高亚精胺作为主要多胺,以双磷脂酰甘油、磷脂酰甘油、磷脂酰乙醇胺、磷脂酰胆碱、鞘糖脂、茚三酮磷脂酰甘油和两种未鉴定的氨基磷脂作为极性脂质。DNA G+C含量为64.6mol%。基于16S rRNA基因测序的系统发育分析表明,SN6-13T菌株与晚生鞘氨醇单胞菌LNB2T关系最为密切(序列相似性为95.4%),并在鞘氨醇单胞菌属中形成一个单独的分支。基于表型、化学分类和系统发育特征,得出结论:SN6-13T菌株代表鞘氨醇单胞菌属的一个新物种,为此提出新名称火山鞘氨醇单胞菌(Sphingomonas vulcanisoli sp. nov.)。模式菌株为SN6-13T(=KCTC 42454T=CECT 8804T)。

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