Koscianska Edyta, Witkos Tomasz M, Kozlowska Emilia, Wojciechowska Marzena, Krzyzosiak Wlodzimierz J
Department of Molecular Biomedicine, Institute of Bioorganic Chemistry, Polish Academy of Sciences, Noskowskiego 12/14, 61-704 Poznan, Poland
Department of Molecular Biomedicine, Institute of Bioorganic Chemistry, Polish Academy of Sciences, Noskowskiego 12/14, 61-704 Poznan, Poland.
Nucleic Acids Res. 2015 Oct 30;43(19):9500-18. doi: 10.1093/nar/gkv849. Epub 2015 Aug 24.
The fundamental role of microRNAs (miRNAs) in the regulation of gene expression has been well-established, but many miRNA-driven regulatory mechanisms remain elusive. In the present study, we demonstrate that miRNAs regulate the expression of DMPK, the gene mutated in myotonic dystrophy type 1 (DM1), and we provide insight regarding the concerted effect of the miRNAs on the DMPK target. Specifically, we examined the binding of several miRNAs to the DMPK 3' UTR using luciferase assays. We validated the interactions between the DMPK transcript and the conserved miR-206 and miR-148a. We suggest a possible cooperativity between these two miRNAs and discuss gene targeting by miRNA pairs that vary in distance between their binding sites and expression profiles. In the same luciferase reporter system, we showed miR-15b/16 binding to the non-conserved CUG repeat tract present in the DMPK transcript and that the CUG-repeat-binding miRNAs might also act cooperatively. Moreover, we detected miR-16 in cytoplasmic foci formed by exogenously expressed RNAs with expanded CUG repeats. Therefore, we propose that the expanded CUGs may serve as a target for concerted regulation by miRNAs and may also act as molecular sponges for natural miRNAs with CAG repeats in their seed regions, thereby affecting their physiological functions.
微小RNA(miRNA)在基因表达调控中的基本作用已得到充分证实,但许多由miRNA驱动的调控机制仍不清楚。在本研究中,我们证明miRNA可调节强直性肌营养不良1型(DM1)中发生突变的基因DMPK的表达,并深入探讨了miRNA对DMPK靶点的协同作用。具体而言,我们使用荧光素酶测定法检测了几种miRNA与DMPK 3'非翻译区(UTR)的结合。我们验证了DMPK转录本与保守的miR-206和miR-148a之间的相互作用。我们提出了这两种miRNA之间可能存在的协同作用,并讨论了结合位点距离和表达谱不同的miRNA对的基因靶向作用。在同一荧光素酶报告系统中,我们显示miR-15b/16与DMPK转录本中存在的非保守CUG重复序列结合,并且与CUG重复序列结合的miRNA也可能协同发挥作用。此外,我们在由外源表达的具有扩展CUG重复序列的RNA形成的细胞质灶中检测到了miR-16。因此,我们提出扩展的CUG可能作为miRNA协同调控的靶点,也可能作为种子区域具有CAG重复序列的天然miRNA的分子海绵,从而影响它们的生理功能。