南极细菌丁香假单胞菌Lz4W外膜囊泡的蛋白质组
The proteome of the outer membrane vesicles of an Antarctic bacterium Pseudomonas syringae Lz4W.
作者信息
Kulkarni Heramb M, Swamy Ch V B, Jagannadham Medicharla V
机构信息
CSIR-Centre for Cellular and Molecular Biology, Uppal Road, Tarnaka, Hyderabad 500007, India.
出版信息
Data Brief. 2015 Jul 11;4:406-9. doi: 10.1016/j.dib.2015.07.001. eCollection 2015 Sep.
Abstract
Outer membrane vesicles (OMVs) of gram-negative bacteria are released during all growth phases and play an important role in bacterial physiology. They consist of lipids, proteins, lipopolysaccharides and other molecules. The OMVs of the Antarctic bacterium Pseudomonas syringae Lz 4W were isolated and identified their proteins. The mass spectral data set deposited with PRIDE, accession number PXD 000221 is presented in this report. The proteins identified from the OMVs of P. syringae Lz4W, data of this study were published in the Journal of proteome research [1].
摘要
革兰氏阴性菌的外膜囊泡（OMV）在所有生长阶段都会释放，并在细菌生理学中发挥重要作用。它们由脂质、蛋白质、脂多糖和其他分子组成。对南极细菌丁香假单胞菌Lz 4W的OMV进行了分离，并鉴定了其蛋白质。本报告展示了存于PRIDE数据库、登录号为PXD 000221的质谱数据集。从丁香假单胞菌Lz4W的OMV中鉴定出的蛋白质，本研究的数据已发表在《蛋白质组研究杂志》[1]上。
相似文献
1
The proteome of the outer membrane vesicles of an Antarctic bacterium Pseudomonas syringae Lz4W.
Data Brief. 2015 Jul 11;4:406-9. doi: 10.1016/j.dib.2015.07.001. eCollection 2015 Sep.
2
Molecular characterization and functional analysis of outer membrane vesicles from the antarctic bacterium Pseudomonas syringae suggest a possible response to environmental conditions.
J Proteome Res. 2014 Mar 7;13(3):1345-58. doi: 10.1021/pr4009223. Epub 2014 Jan 29.
3
Characterization and proteomic analysis of outer membrane vesicles from a commensal microbe, Enterobacter cloacae.
J Proteomics. 2021 Jan 16;231:103994. doi: 10.1016/j.jprot.2020.103994. Epub 2020 Sep 29.
4
Identification of proteins from membrane preparations by a combination of MALDI TOF-TOF and LC-coupled linear ion trap MS analysis of an Antarctic bacterium Pseudomonas syringae Lz4W, a strain with unsequenced genome.
Electrophoresis. 2008 Nov;29(21):4341-50. doi: 10.1002/elps.200700750.
5
Identification of outer membrane proteins from an Antarctic bacterium Pseudomonas syringae Lz4W.
Mol Cell Proteomics. 2011 Jun;10(6):M110.004549. doi: 10.1074/mcp.M110.004549. Epub 2011 Mar 29.
6
Proteomic profiling of Gram-negative bacterial outer membrane vesicles: Current perspectives.
Proteomics Clin Appl. 2016 Oct;10(9-10):897-909. doi: 10.1002/prca.201600032. Epub 2016 Sep 22.
7
Investigating the Functional Role of Hypothetical Proteins From an Antarctic Bacterium sp. Lz4W: Emphasis on Identifying Proteins Involved in Cold Adaptation.
Front Genet. 2022 Mar 11;13:825269. doi: 10.3389/fgene.2022.825269. eCollection 2022.
8
Helicobacter pylori Growth Stage Determines the Size, Protein Composition, and Preferential Cargo Packaging of Outer Membrane Vesicles.
Proteomics. 2019 Jan;19(1-2):e1800209. doi: 10.1002/pmic.201800209. Epub 2018 Dec 17.
9
Differential expression of membrane proteins helps Antarctic Pseudomonas syringae to acclimatize upon temperature variations.
J Proteomics. 2012 Apr 18;75(8):2488-99. doi: 10.1016/j.jprot.2012.02.033. Epub 2012 Mar 7.
10
Characterization of outer membrane vesicles released by the psychrotolerant bacterium Pseudoalteromonas antarctica NF3.
Environ Microbiol. 2006 Sep;8(9):1523-33. doi: 10.1111/j.1462-2920.2006.01043.x.
引用本文的文献
1
Insights into Bacterial Extracellular Vesicle Biogenesis, Functions, and Implications in Plant-Microbe Interactions.
Microorganisms. 2024 Mar 6;12(3):532. doi: 10.3390/microorganisms12030532.
2
Proteomic Profiling Reveals Distinct Bacterial Extracellular Vesicle Subpopulations with Possibly Unique Functionality.
Appl Environ Microbiol. 2023 Jan 31;89(1):e0168622. doi: 10.1128/aem.01686-22. Epub 2022 Dec 19.
3
Extracellular vesicles: Their functions in plant-pathogen interactions.
Mol Plant Pathol. 2022 Jun;23(6):760-771. doi: 10.1111/mpp.13170. Epub 2021 Dec 6.
4
The extracellular vesicle generation paradox: a bacterial point of view.
EMBO J. 2021 Nov 2;40(21):e108174. doi: 10.15252/embj.2021108174. Epub 2021 Oct 11.
5
Protective plant immune responses are elicited by bacterial outer membrane vesicles.
Cell Rep. 2021 Jan 19;34(3):108645. doi: 10.1016/j.celrep.2020.108645.
6
Chemoorganotrophic Bacteria From Lake Fryxell, Antarctica, Including Strain LFY10, a Cold-Adapted, Halotolerant Bacterium Useful in Teaching Labs.
Front Microbiol. 2019 Feb 6;10:156. doi: 10.3389/fmicb.2019.00156. eCollection 2019.
7
Copper stress response in yeast Rhodotorula mucilaginosa AN5 isolated from sea ice, Antarctic.
Microbiologyopen. 2019 Mar;8(3):e00657. doi: 10.1002/mbo3.657. Epub 2018 Jun 21.
本文引用的文献
1
Molecular characterization and functional analysis of outer membrane vesicles from the antarctic bacterium Pseudomonas syringae suggest a possible response to environmental conditions.
J Proteome Res. 2014 Mar 7;13(3):1345-58. doi: 10.1021/pr4009223. Epub 2014 Jan 29.
2
Draft Genome Sequence of the Antarctic Psychrophilic Bacterium Pseudomonas syringae Strain Lz4W.
Genome Announc. 2013 Jun 20;1(3):e00377-13. doi: 10.1128/genomeA.00377-13.
3
Quantitative and qualitative preparations of bacterial outer membrane vesicles.
Methods Mol Biol. 2013;966:259-72. doi: 10.1007/978-1-62703-245-2_16.
4
The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013.
Nucleic Acids Res. 2013 Jan;41(Database issue):D1063-9. doi: 10.1093/nar/gks1262. Epub 2012 Nov 29.
5
Virulence factors are released in association with outer membrane vesicles of Pseudomonas syringae pv. tomato T1 during normal growth.
Biochim Biophys Acta. 2013 Jan;1834(1):231-9. doi: 10.1016/j.bbapap.2012.09.015. Epub 2012 Oct 5.
6
Identification of outer membrane proteins from an Antarctic bacterium Pseudomonas syringae Lz4W.
Mol Cell Proteomics. 2011 Jun;10(6):M110.004549. doi: 10.1074/mcp.M110.004549. Epub 2011 Mar 29.
7
Membrane vesicles: a common feature in the extracellular matter of cold-adapted antarctic bacteria.
Microb Ecol. 2010 Apr;59(3):476-86. doi: 10.1007/s00248-009-9622-9. Epub 2010 Feb 2.
8
Identification of proteins from membrane preparations by a combination of MALDI TOF-TOF and LC-coupled linear ion trap MS analysis of an Antarctic bacterium Pseudomonas syringae Lz4W, a strain with unsequenced genome.
Electrophoresis. 2008 Nov;29(21):4341-50. doi: 10.1002/elps.200700750.
9
The release of outer membrane vesicles from the strains of enterotoxigenic Escherichia coli.
Microbiol Immunol. 1995;39(7):451-6. doi: 10.1111/j.1348-0421.1995.tb02228.x.
10
Cleavage of structural proteins during the assembly of the head of bacteriophage T4.
Nature. 1970 Aug 15;227(5259):680-5. doi: 10.1038/227680a0.
Zotero 插件