Elliott Tyler A, Gregory T Ryan
Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada N1G 2W1.
Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada N1G 2W1
Philos Trans R Soc Lond B Biol Sci. 2015 Sep 26;370(1678):20140331. doi: 10.1098/rstb.2014.0331.
Some notable exceptions aside, eukaryotic genomes are distinguished from those of Bacteria and Archaea in a number of ways, including chromosome structure and number, repetitive DNA content, and the presence of introns in protein-coding regions. One of the most notable differences between eukaryotic and prokaryotic genomes is in size. Unlike their prokaryotic counterparts, eukaryotes exhibit enormous (more than 60,000-fold) variability in genome size which is not explained by differences in gene number. Genome size is known to correlate with cell size and division rate, and by extension with numerous organism-level traits such as metabolism, developmental rate or body size. Less well described are the relationships between genome size and other properties of the genome, such as gene content, transposable element content, base pair composition and related features. The rapid expansion of 'complete' genome sequencing projects has, for the first time, made it possible to examine these relationships across a wide range of eukaryotes in order to shed new light on the causes and correlates of genome size diversity. This study presents the results of phylogenetically informed comparisons of genome data for more than 500 species of eukaryotes. Several relationships are described between genome size and other genomic parameters, and some recommendations are presented for how these insights can be extended even more broadly in the future.
除了一些显著的例外情况,真核生物基因组在许多方面与细菌和古细菌的基因组有所不同,包括染色体结构和数量、重复DNA含量以及蛋白质编码区域中内含子的存在。真核生物和原核生物基因组之间最显著的差异之一在于大小。与原核生物不同,真核生物的基因组大小呈现出巨大的(超过60000倍)变异性,而这种变异性无法用基因数量的差异来解释。已知基因组大小与细胞大小和分裂速率相关,进而与许多生物体水平的特征相关,如新陈代谢、发育速率或体型。基因组大小与基因组的其他特性之间的关系,如基因含量、转座元件含量、碱基对组成及相关特征,描述得较少。“完整”基因组测序项目的迅速扩展首次使得能够在广泛的真核生物中研究这些关系,以便为基因组大小多样性的原因和相关因素提供新的见解。本研究展示了对500多种真核生物的基因组数据进行系统发育信息比较的结果。描述了基因组大小与其他基因组参数之间的几种关系,并就如何在未来更广泛地扩展这些见解提出了一些建议。