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探索水在酶工程中作为构建模块的作用。

Exploring water as building bricks in enzyme engineering.

作者信息

Hendil-Forssell Peter, Martinelle Mats, Syrén Per-Olof

机构信息

KTH Royal Institute of Technology, Division of Industrial Biotechnology, AlbaNova University Centre, 106 91 Stockholm, Sweden.

KTH Royal Institute of Technology, Division of Proteomics & Nanobiotechnology, Science for Life Laboratory, 171 21 Stockholm, Sweden.

出版信息

Chem Commun (Camb). 2015 Dec 18;51(97):17221-4. doi: 10.1039/c5cc07162c.

DOI:10.1039/c5cc07162c
PMID:26426706
Abstract

A novel enzyme engineering strategy for accelerated catalysis based on redesigning a water network through protein backbone deshielding is presented. Fundamental insight into the energetic consequences associated with the design is discussed in the light of experimental results and computer simulations. Using water as biobricks provides unique opportunities when transition state stabilisation is not easily attained by traditional enzyme engineering.

摘要

本文提出了一种基于通过蛋白质主链去屏蔽重新设计水网络来加速催化的新型酶工程策略。根据实验结果和计算机模拟,讨论了对与该设计相关的能量后果的基本见解。当传统酶工程难以实现过渡态稳定时,利用水作为生物构件提供了独特的机会。

相似文献

1
Exploring water as building bricks in enzyme engineering.探索水在酶工程中作为构建模块的作用。
Chem Commun (Camb). 2015 Dec 18;51(97):17221-4. doi: 10.1039/c5cc07162c.
2
Hybrid schemes based on quantum mechanics/molecular mechanics simulations goals to success, problems, and perspectives.基于量子力学/分子力学模拟的混合方案的目标、问题和展望。
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J Vis Exp. 2016 Jan 16(107):e53168. doi: 10.3791/53168.
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Role of protein dynamics in reaction rate enhancement by enzymes.蛋白质动力学在酶提高反应速率中的作用。
J Am Chem Soc. 2005 Nov 2;127(43):15248-56. doi: 10.1021/ja055251s.
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Homogeneous biocatalysis in organic solvents and water-organic mixtures.在有机溶剂和水-有机混合物中的均相生物催化
Crit Rev Biotechnol. 2003;23(3):195-231.
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The influence of protein dynamics on the success of computational enzyme design.蛋白质动力学对计算酶设计成功的影响。
J Am Chem Soc. 2009 Oct 7;131(39):14111-5. doi: 10.1021/ja905396s.
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Advancing biocatalysis through enzyme, cellular, and platform engineering.通过酶工程、细胞工程和平台工程推动生物催化发展。
Biotechnol Prog. 2008 May-Jun;24(3):515-9. doi: 10.1021/bp070387a. Epub 2008 Mar 12.
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How enzymes work: analysis by modern rate theory and computer simulations.酶的作用方式:基于现代速率理论和计算机模拟的分析
Science. 2004 Jan 9;303(5655):186-95. doi: 10.1126/science.1088172.
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Molecular dynamics explorations of active site structure in designed and evolved enzymes.设计酶和进化酶中活性位点结构的分子动力学探索。
Acc Chem Res. 2015 Apr 21;48(4):1080-9. doi: 10.1021/ar500452q. Epub 2015 Mar 4.
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Comment on "A stationary-wave model of enzyme catalysis" by Carlo Canepa.评论卡洛·卡内帕的“酶催化的驻波模型”。
J Comput Chem. 2011 Jan 30;32(2):368-9; author reply 370-1. doi: 10.1002/jcc.21618.

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Separating Thermodynamics from Kinetics-A New Understanding of the Transketolase Reaction.将热力学与动力学分离——对转酮醇酶反应的新认识
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