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中国西南部四川省利用条形码焦磷酸测序技术分析松茸子实体相关细菌多样性及群落

Analysis of Bacterial Diversity and Communities Associated with Tricholoma matsutake Fruiting Bodies by Barcoded Pyrosequencing in Sichuan Province, Southwest China.

作者信息

Li Qiang, Li Xiaolin, Chen Cheng, Li Shuhong, Huang Wenli, Xiong Chuan, Jin Xing, Zheng Linyong

机构信息

College of Life Science, Sichuan University, Chengdu, Sichuan 610065, P.R. China.

Institute of Biological & Nuclear Technology, Sichuan Academy of Agricultural Sciences, Chengdu, Sichuan 610066, P.R. China.

出版信息

J Microbiol Biotechnol. 2016 Jan;26(1):89-98. doi: 10.4014/jmb.1505.05008.

Abstract

Endophytes play an important role in the growth and development of the host. However, the study of endophytes is mostly focused on plants, and reports on bacteria associated with fungi are relatively rare. We studied the bacteria associated with fruiting bodies of Tricholoma matsutake picked from seven main T. matsutake-producing areas in Sichuan, China, by barcoded pyrosequencing. About 8,272 reads were obtained per sample, representing 40 phyla, 103 classes, and 495 genera of bacteria and archaea, and 361-797 operational taxonomic units were observed at a 97% similarity level. The bacterial community was always both more abundant and more diverse than the archaeal community. UniFrac analysis showed there were some difference of bacterial communities among the samples sites. Three bacterial phyla, Proteobacteria, Bacteroidetes, and Firmicutes, were dominant in all samples. Correlation analysis showed there was a significant correlation between some soil properties and bacterial community associated with T. matsutake. This study demonstrated that the bacteria associated with T. matsutake fruiting bodies were diversified. Among these bacteria, we may find some strains that can promote the growth of T. matsutake.

摘要

内生菌在宿主的生长发育中发挥着重要作用。然而,目前关于内生菌的研究大多集中在植物上,而与真菌相关细菌的报道相对较少。我们通过条形码焦磷酸测序技术,对采自中国四川七个主要松茸产区的松茸子实体相关细菌进行了研究。每个样本约获得8272条 reads,代表了细菌和古菌的40个门、103个纲和495个属,在97%相似度水平下观察到361 - 797个操作分类单元。细菌群落始终比古菌群落更丰富、更多样化。非加权组平均法(UniFrac)分析表明,样本位点之间的细菌群落存在一些差异。变形菌门、拟杆菌门和厚壁菌门这三个细菌门在所有样本中占主导地位。相关性分析表明,一些土壤性质与松茸相关细菌群落之间存在显著相关性。本研究表明,与松茸子实体相关的细菌具有多样性。在这些细菌中,我们可能会发现一些能够促进松茸生长的菌株。

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