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鸡myb原癌基因5'端内超螺旋诱导的Z-DNA形成。

Supercoil-induced Z-DNA formation within 5'-end of chicken myb proto-oncogene.

作者信息

Vlach J, Dvorak M, Bartunek P, Pecenka V, Travnicek M, Sponar J

机构信息

Institute of Organic Chemistry and Biochemistry, Czechoslovak Academy of Sciences, Prague.

出版信息

Biochem Biophys Res Commun. 1989 Feb 15;158(3):737-42. doi: 10.1016/0006-291x(89)92783-6.

DOI:10.1016/0006-291x(89)92783-6
PMID:2645867
Abstract

We have analyzed the recently sequenced and characterized 2.9 kb fragment derived from the 5'-end of chicken myb proto-oncogene with respect to structural perturbations induced by DNA supercoiling. Within the first intron a 50 bp sequence stretch was localized, starting approximately 450 nucleotides downstream from putative ATG initiation codon, which forms a non-B-DNA structure. Fine mapping with structural probes revealed the three adjacent regions with imperfect purine-pyrimidine alternation creating together relatively long Z-forming tract, parts of which may undergo a B-Z DNA transition at different superhelical densities.

摘要

我们分析了最近测序并表征的源自鸡myb原癌基因5'端的2.9 kb片段,研究其由DNA超螺旋引起的结构扰动。在第一个内含子内定位到一段50 bp的序列延伸,起始于假定的ATG起始密码子下游约450个核苷酸处,该序列形成一种非B-DNA结构。用结构探针进行精细定位揭示了三个相邻区域,它们具有不完全的嘌呤-嘧啶交替,共同形成了相对较长的Z型形成区,其中部分区域可能在不同的超螺旋密度下发生B-Z DNA转变。

相似文献

1
Supercoil-induced Z-DNA formation within 5'-end of chicken myb proto-oncogene.鸡myb原癌基因5'端内超螺旋诱导的Z-DNA形成。
Biochem Biophys Res Commun. 1989 Feb 15;158(3):737-42. doi: 10.1016/0006-291x(89)92783-6.
2
A cis-acting transcription element of the c-myc gene can assume an H-DNA conformation.c-myc基因的一个顺式作用转录元件可呈现H-DNA构象。
Nucleic Acids Res. 1989 Oct 11;17(19):7771-8. doi: 10.1093/nar/17.19.7771.
3
Transcription of the chicken myb proto-oncogene starts within a CpG island.鸡原癌基因myb的转录起始于一个CpG岛内部。
Nucleic Acids Res. 1989 Jul 25;17(14):5651-64. doi: 10.1093/nar/17.14.5651.
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Chemical probes of DNA conformation: detection of Z-DNA at nucleotide resolution.DNA构象的化学探针:核苷酸分辨率下Z-DNA的检测
Cell. 1985 Oct;42(3):713-24. doi: 10.1016/0092-8674(85)90268-5.
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Complex structural behavior of oligopurine-oligopyrimidine sequence cloned within the supercoiled plasmid.克隆于超螺旋质粒内的寡聚嘌呤-寡聚嘧啶序列的复杂结构行为。
Nucleic Acids Res. 1989 Jan 25;17(2):617-29. doi: 10.1093/nar/17.2.617.
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Chemical probing of the B-Z transition in negatively supercoiled DNA.
J Biomol Struct Dyn. 1988 Aug;6(1):153-66. doi: 10.1080/07391102.1988.10506488.
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Characteristics of Z-DNA helices formed by imperfect (purine-pyrimidine) sequences in plasmids.质粒中由不完全(嘌呤 - 嘧啶)序列形成的Z - DNA螺旋的特征。
J Biol Chem. 1988 May 25;263(15):7378-85.
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Gradual and oriented B-Z transition in 5'-untranscribed region of mouse ribosomal DNA.小鼠核糖体DNA 5'非转录区的渐进性定向B-Z转变
J Biol Chem. 1994 Jul 29;269(30):19238-44.
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Z-DNA formation in the rat growth hormone gene promoter region.大鼠生长激素基因启动子区域Z-DNA的形成
Mol Cell Biol. 1990 Oct;10(10):5378-87. doi: 10.1128/mcb.10.10.5378-5387.1990.
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Effect of length, supercoiling, and pH on intramolecular triplex formation. Multiple conformers at pur.pyr mirror repeats.长度、超螺旋和pH对分子内三链体形成的影响。嘌呤-嘧啶镜像重复序列处的多种构象异构体。
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引用本文的文献

1
Transcription of the chicken myb proto-oncogene starts within a CpG island.鸡原癌基因myb的转录起始于一个CpG岛内部。
Nucleic Acids Res. 1989 Jul 25;17(14):5651-64. doi: 10.1093/nar/17.14.5651.