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Prioritization of Trypanosoma brucei editosome protein interactions interfaces at residue resolution through proteome-scale network analysis.通过蛋白质组规模的网络分析,以残基分辨率对布氏锥虫编辑体蛋白相互作用界面进行优先级排序。
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本文引用的文献

1
Integrity of the core mitochondrial RNA-binding complex 1 is vital for trypanosome RNA editing.核心线粒体RNA结合复合体1的完整性对于锥虫RNA编辑至关重要。
RNA. 2015 Dec;21(12):2088-102. doi: 10.1261/rna.052340.115. Epub 2015 Oct 7.
2
Structures of the T. brucei kRNA editing factor MRB1590 reveal unique RNA-binding pore motif contained within an ABC-ATPase fold.布氏锥虫kRNA编辑因子MRB1590的结构揭示了ABC-ATPase折叠中包含的独特RNA结合孔基序。
Nucleic Acids Res. 2015 Aug 18;43(14):7096-109. doi: 10.1093/nar/gkv647. Epub 2015 Jun 27.
3
Native Variants of the MRB1 Complex Exhibit Specialized Functions in Kinetoplastid RNA Editing.MRB1复合体的天然变体在动基体RNA编辑中表现出特定功能。
PLoS One. 2015 Apr 30;10(4):e0123441. doi: 10.1371/journal.pone.0123441. eCollection 2015.
4
An arginine-glycine-rich RNA binding protein impacts the abundance of specific mRNAs in the mitochondria of Trypanosoma brucei.一种富含精氨酸-甘氨酸的RNA结合蛋白影响布氏锥虫线粒体中特定mRNA的丰度。
Eukaryot Cell. 2015 Feb;14(2):149-57. doi: 10.1128/EC.00232-14. Epub 2014 Dec 5.
5
Bloodstream form Trypanosoma brucei do not require mRPN1 for gRNA processing.血流型布氏锥虫在加工引导RNA时不需要mRPN1。
RNA. 2015 Jan;21(1):28-35. doi: 10.1261/rna.045708.114. Epub 2014 Nov 17.
6
RNA binding and core complexes constitute the U-insertion/deletion editosome.RNA结合蛋白和核心复合物构成了U插入/缺失编辑体。
Mol Cell Biol. 2014 Dec 1;34(23):4329-42. doi: 10.1128/MCB.01075-14. Epub 2014 Sep 15.
7
Native mitochondrial RNA-binding complexes in kinetoplastid RNA editing differ in guide RNA composition.原生线粒体 RNA 结合复合物在动基体 RNA 编辑中在指导 RNA 组成上有所不同。
RNA. 2014 Jul;20(7):1142-52. doi: 10.1261/rna.044495.114. Epub 2014 May 27.
8
A-to-I RNA editing occurs at over a hundred million genomic sites, located in a majority of human genes.A-to-I RNA 编辑发生在超过一亿个基因组位点,位于大多数人类基因中。
Genome Res. 2014 Mar;24(3):365-76. doi: 10.1101/gr.164749.113. Epub 2013 Dec 17.
9
Trans-splicing and RNA editing of LSU rRNA in Diplonema mitochondria.LSU rRNA 的跨拼接和 RNA 编辑在 Diplonema 线粒体中。
Nucleic Acids Res. 2014 Feb;42(4):2660-72. doi: 10.1093/nar/gkt1152. Epub 2013 Nov 19.
10
A core MRB1 complex component is indispensable for RNA editing in insect and human infective stages of Trypanosoma brucei.核心 MRB1 复合物组分对于布氏锥虫昆虫和人体感染阶段的 RNA 编辑是不可或缺的。
PLoS One. 2013 Oct 18;8(10):e78015. doi: 10.1371/journal.pone.0078015. eCollection 2013.

锥虫RNA编辑:插入和去除尿嘧啶的复杂性。

Trypanosome RNA editing: the complexity of getting U in and taking U out.

作者信息

Read Laurie K, Lukeš Julius, Hashimi Hassan

机构信息

University at Buffalo School of Medicine, Buffalo, NY, USA.

Institute of Parasitology, Biology Centre, Czech Academy of Sciences, České Budějovice, Czech Republic.

出版信息

Wiley Interdiscip Rev RNA. 2016 Jan-Feb;7(1):33-51. doi: 10.1002/wrna.1313. Epub 2015 Nov 2.

DOI:10.1002/wrna.1313
PMID:26522170
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4835692/
Abstract

RNA editing, which adds sequence information to RNAs post-transcriptionally, is a widespread phenomenon throughout eukaryotes. The most complex form of this process is the uridine (U) insertion/deletion editing that occurs in the mitochondria of kinetoplastid protists. RNA editing in these flagellates is specified by trans-acting guide RNAs and entails the insertion of hundreds and deletion of dozens of U residues from mitochondrial RNAs to produce mature, translatable mRNAs. An emerging model indicates that the machinery required for trypanosome RNA editing is much more complicated than previously appreciated. A family of RNA editing core complexes (RECCs), which contain the required enzymes and several structural proteins, catalyze cycles of U insertion and deletion. A second, dynamic multiprotein complex, the Mitochondrial RNA Binding 1 (MRB1) complex, has recently come to light as another essential component of the trypanosome RNA editing machinery. MRB1 likely serves as the platform for kinetoplastid RNA editing, and plays critical roles in RNA utilization and editing processivity. MRB1 also appears to act as a hub for coordination of RNA editing with additional mitochondrial RNA processing events. This review highlights the current knowledge regarding the complex molecular machinery involved in trypanosome RNA editing. WIREs RNA 2016, 7:33-51. doi: 10.1002/wrna.1313 For further resources related to this article, please visit the WIREs website.

摘要

RNA编辑是在转录后向RNA添加序列信息的过程,在整个真核生物中普遍存在。这一过程最复杂的形式是发生在动基体原生生物线粒体中的尿苷(U)插入/缺失编辑。这些鞭毛虫中的RNA编辑由反式作用指导RNA指定,需要从线粒体RNA中插入数百个U残基并删除数十个U残基,以产生成熟的、可翻译的mRNA。一个新出现的模型表明,锥虫RNA编辑所需的机制比之前认为的要复杂得多。一类RNA编辑核心复合体(RECCs)包含所需的酶和几种结构蛋白,催化U插入和删除的循环。第二种动态多蛋白复合体,即线粒体RNA结合1(MRB1)复合体,最近作为锥虫RNA编辑机制的另一个重要组成部分被发现。MRB1可能是动基体RNA编辑的平台,在RNA利用和编辑持续性中起关键作用。MRB1似乎还充当了将RNA编辑与其他线粒体RNA加工事件协调起来的枢纽。本综述重点介绍了目前关于锥虫RNA编辑所涉及的复杂分子机制的知识。WIREs RNA 2016, 7:33 - 51. doi: 10.1002/wrna.1313 有关本文的更多资源,请访问WIREs网站。