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铁硫簇生物合成伴侣蛋白:高度特异性蛋白质-蛋白质相互作用突变稳健性出现的证据

Iron-Sulfur Cluster Biogenesis Chaperones: Evidence for Emergence of Mutational Robustness of a Highly Specific Protein-Protein Interaction.

作者信息

Delewski Wojciech, Paterkiewicz Bogumiła, Manicki Mateusz, Schilke Brenda, Tomiczek Bartłomiej, Ciesielski Szymon J, Nierzwicki Lukasz, Czub Jacek, Dutkiewicz Rafal, Craig Elizabeth A, Marszalek Jaroslaw

机构信息

Laboratory of Evolutionary Biochemistry, Intercollegiate Faculty of Biotechnology, University of Gdansk and Medical University of Gdansk, Gdansk, Poland.

Department of Biochemistry, University of Wisconsin-Madison.

出版信息

Mol Biol Evol. 2016 Mar;33(3):643-56. doi: 10.1093/molbev/msv254. Epub 2015 Nov 5.

Abstract

Biogenesis of iron-sulfur clusters (FeS) is a highly conserved process involving Hsp70 and J-protein chaperones. However, Hsp70 specialization differs among species. In most eukaryotes, including Schizosaccharomyces pombe, FeS biogenesis involves interaction between the J-protein Jac1 and the multifunctional Hsp70 Ssc1. But, in Saccharomyces cerevisiae and closely related species, Jac1 interacts with the specialized Hsp70 Ssq1, which emerged through duplication of SSC1. As little is known about how gene duplicates affect the robustness of their protein interaction partners, we analyzed the functional and evolutionary consequences of Ssq1 specialization on the ubiquitous J-protein cochaperone Jac1, by comparing S. cerevisiae and S. pombe. Although deletion of JAC1 is lethal in both species, alanine substitutions within the conserved His-Pro-Asp (HPD) motif, which is critical for Jac1:Hsp70 interaction, have species-specific effects. They are lethal in S. pombe, but not in S. cerevisiae. These in vivo differences correlated with in vitro biochemical measurements. Charged residues present in the J-domain of S. cerevisiae Jac1, but absent in S. pombe Jac1, are important for tolerance of S. cerevisiae Jac1 to HPD alterations. Moreover, Jac1 orthologs from species that encode Ssq1 have a higher sequence divergence. The simplest interpretation of our results is that Ssq1's coevolution with Jac1 resulted in expansion of their binding interface, thus increasing the efficiency of their interaction. Such an expansion could in turn compensate for negative effects of HPD substitutions. Thus, our results support the idea that the robustness of Jac1 emerged as consequence of its highly efficient and specific interaction with Ssq1.

摘要

铁硫簇(FeS)的生物合成是一个高度保守的过程,涉及Hsp70和J蛋白伴侣。然而,Hsp70的特异性在不同物种间存在差异。在包括粟酒裂殖酵母在内的大多数真核生物中,FeS生物合成涉及J蛋白Jac1与多功能Hsp70 Ssc1之间的相互作用。但是,在酿酒酵母及亲缘关系较近的物种中,Jac1与通过SSC1复制而产生的特异性Hsp70 Ssq1相互作用。由于对于基因复制如何影响其蛋白质相互作用伙伴的稳健性了解甚少,我们通过比较酿酒酵母和粟酒裂殖酵母,分析了Ssq1特异性对普遍存在的J蛋白共伴侣Jac1的功能和进化影响。尽管JAC1的缺失在这两个物种中都是致死的,但保守的His-Pro-Asp(HPD)基序内的丙氨酸替代对Jac1:Hsp70相互作用至关重要,且具有物种特异性效应。它们在粟酒裂殖酵母中是致死的,但在酿酒酵母中不是。这些体内差异与体外生化测量结果相关。酿酒酵母Jac1的J结构域中存在而粟酒裂殖酵母Jac1中不存在的带电荷残基,对于酿酒酵母Jac1对HPD改变的耐受性很重要。此外,来自编码Ssq1的物种的Jac1直系同源物具有更高的序列分歧。我们结果的最简单解释是,Ssq1与Jac1的共同进化导致了它们结合界面的扩展,从而提高了它们相互作用的效率。这种扩展反过来可以补偿HPD替代的负面影响。因此,我们的结果支持这样一种观点,即Jac1的稳健性是其与Ssq1高效且特异性相互作用的结果。

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