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使用生物能量模型将亚生物体过程与生态毒理学和种群水平的终点联系起来。

Relating suborganismal processes to ecotoxicological and population level endpoints using a bioenergetic model.

作者信息

Ananthasubramaniam Bharath, McCauley Edward, Gust Kurt A, Kennedy Alan J, Muller Erik B, Perkins Edward J, Nisbet Roger M

出版信息

Ecol Appl. 2015 Sep;25(6):1691-710. doi: 10.1890/14-0498.1.

Abstract

Ecological effects of environmental stressors are commonly evaluated using organismal or suborganismal data, such as standardized toxicity tests that characterize responses of individuals (e.g., mortality and reproduction) and a rapidly growing body of "omics" data. A key challenge for environmental risk assessment is relating such information to population dynamics. One approach uses dynamic energy budget (DEB) models that relate growth and reproduction of individuals to underlying flows of energy and elemental matter. We hypothesize that suborganismal information identifies DEB parameters that are most likely impacted by a particular stressor and that the DEB model can then project suborganismal effects on life history and population endpoints. We formulate and parameterize a model of growth and reproduction for the water flea Daphnia magna. Our model resembles previous generic bioenergetic models, but has explicit representation of discrete molts, an important feature of Daphnia life history. We test its ability to predict six endpoints commonly used in chronic toxicity studies in specified food environments. With just one adjustable parameter, the model successfully predicts growth and reproduction of individuals from a wide array of experiments performed in multiple laboratories using different clones of D. magna raised on different food sources. Fecundity is the most sensitive endpoint, and there is broad correlation between the sensitivities of fecundity and long-run growth rate, as is desirable for the default metric used in chronic toxicity tests. Under some assumptions, we can combine our DEB model with the Euler-Lotka equation to estimate longrun population growth rates at different food levels. A review of Daphnia gene-expression experiments on the effects of contaminant exposure reveals several connections to model parameters, in particular a general trend of increased transcript expression of genes involved in energy assimilation and utilization at concentrations affecting growth and reproduction. The sensitivity of fecundity to many model parameters was consistent with frequent generalized observations of decreased expression of genes involved in reproductive physiology, but interpretation of these observations requires further mechanistic modeling. We thus propose an approach based on generic DEB models incorporating few essential species-specific features for rapid extrapolation of ecotoxicogenomic assays for Daphnia-based population risk assessment.

摘要

环境压力源的生态效应通常使用生物体或亚生物体数据进行评估,例如标准化毒性测试,这些测试可以表征个体的反应(如死亡率和繁殖率)以及迅速增长的“组学”数据。环境风险评估的一个关键挑战是将此类信息与种群动态联系起来。一种方法是使用动态能量收支(DEB)模型,该模型将个体的生长和繁殖与能量和元素物质的潜在流动联系起来。我们假设亚生物体信息可以识别最有可能受到特定压力源影响的DEB参数,然后DEB模型可以预测亚生物体对生活史和种群终点的影响。我们构建并参数化了大型溞生长和繁殖的模型。我们的模型类似于以前的通用生物能量模型,但明确表示了离散蜕皮,这是大型溞生活史的一个重要特征。我们测试了它预测特定食物环境中慢性毒性研究常用的六个终点的能力。仅用一个可调参数,该模型就成功预测了在多个实验室进行的一系列实验中个体的生长和繁殖情况,这些实验使用了不同克隆的大型溞,它们以不同的食物来源饲养。繁殖力是最敏感的终点,繁殖力和长期生长率的敏感性之间存在广泛的相关性,这对于慢性毒性测试中使用的默认指标来说是理想的。在一些假设下,我们可以将我们的DEB模型与欧拉-洛特卡方程相结合,以估计不同食物水平下的长期种群增长率。对大型溞基因表达实验中污染物暴露影响的综述揭示了与模型参数的几个联系,特别是在影响生长和繁殖的浓度下,参与能量同化和利用的基因转录表达增加的一般趋势。繁殖力对许多模型参数的敏感性与生殖生理学相关基因表达降低的频繁普遍观察结果一致,但对这些观察结果的解释需要进一步的机理建模。因此,我们提出了一种基于通用DEB模型的方法,该模型纳入了一些基本的物种特异性特征,用于快速外推基于大型溞的种群风险评估的生态毒理基因组学分析。

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