Bilbrey Jenna A, Kazez Arianna H, Locklin Jason, Allen Wesley D
Department of Chemistry and Center for Computational Chemistry, University of Georgia , Athens, Georgia 30602, United States.
Department of Chemistry and College of Engineering, University of Georgia , Athens, Georgia 30602, United States.
J Chem Theory Comput. 2013 Dec 10;9(12):5734-44. doi: 10.1021/ct400426e. Epub 2013 Nov 21.
Steric demands of a ligand can be quantified by the area occluded by the ligand on the surface of an encompassing sphere centered at the metal atom. When viewed as solid spheres illuminated by the metal center, the ligand atoms generally cast a very complicated collective shadow onto the encompassing sphere, causing mathematical difficulties in computing the subtended solid angle. Herein, an exact, analytic solution to the ligand solid angle integration problem is presented based on a line integral around the multisegmented perimeter of the ligand shadow. The solution, which is valid for any ligand bound to any metal center, provides an excellent method for analyzing geometric structures from quantum chemical computations or X-ray crystallography. Over 275 structures of various metals bound to diverse mono- and multidentate ligands were optimized using B3LYP density functional theory to exhibit exact solid angle (Ω°) computations. Among the intriguing Ω° solutions, Pd(xantphos) and ferrocene exhibit holes in their ligand shadows, and Fe(EDTA)(2-) has a surprisingly simple shadow defined by only four arcs, despite having a multitude of overlaps among individual shadow cones.
配体的空间需求可以通过以金属原子为中心的包围球表面上配体所占据的面积来量化。当将配体原子视为由金属中心照亮的实心球时,它们通常会在包围球上投射出非常复杂的集体阴影,这给计算所对立体角带来了数学困难。在此,基于围绕配体阴影多段周长的线积分,给出了配体立体角积分问题的精确解析解。该解对任何与任何金属中心结合的配体均有效,为从量子化学计算或X射线晶体学分析几何结构提供了一种出色的方法。使用B3LYP密度泛函理论对超过275种与各种单齿和多齿配体结合的不同金属结构进行了优化,以展示精确的立体角(Ω°)计算。在有趣的Ω°解中,Pd(xantphos)和二茂铁在其配体阴影中有孔洞,而Fe(EDTA)(2-)尽管各个阴影锥之间有大量重叠,但其阴影却出奇地简单,仅由四条弧线定义。