The Institute of Chemistry and the Lise Meitner-Minerva Center for Computational Quantum Chemistry, The Hebrew University of Jerusalem, 91904 Jerusalem, Israel.
J Chem Theory Comput. 2011 Feb 8;7(2):327-39. doi: 10.1021/ct100554g. Epub 2011 Jan 5.
The mixed density functional theory (DFT) and valence bond study described herein focuses on the activation of 17 benzene derivatives by the active species of Cytochrome P450, so-called Compound I (Cpd I), as well as by the methoxy radical, as a potentially simple model of Cpd I (Jones, J. P.; Mysinger, M.; Korzekwa, K. R. Drug Metab. Dispos. 2002, 30, 7-12). Valence bond modeling is employed to rationalize the P450 mechanism and its spin-state selectivity from first principles of electronic structure and to predict activation energies independently, using easily accessible properties of the reactants: the singlet-triplet excitation energies, the ionization potentials of the aromatics, and the electron affinity of Cpd I and/or of the methoxy radical. It is shown that the valence bond model rationalizes all the mechanistic aspects and predicts activation barriers (for 35 reactions) with reasonable accuracy compared to the DFT barriers with an average deviation of ±1.0 kcal·mol(-1) (for DFT barriers, see: Bathelt, C. M.; Ridder, L.; Mulholland, A. J.; Harvey, J. N. Org. Biomol. Chem. 2004, 2, 2998-3005). The valence bond modeling also reveals the mechanistic similarities between the P450 Cpd I and methoxy reactions and enables one to make predictions of barriers for reactions from other studies.
本文采用混合密度泛函理论(DFT)和价键理论研究了细胞色素 P450 中所谓的复合 I(Cpd I)活性物质以及甲氧基自由基对 17 种苯衍生物的激活作用,以此作为 Cpd I 的简单模型(Jones, J. P.; Mysinger, M.; Korzekwa, K. R. Drug Metab. Dispos. 2002, 30, 7-12)。价键理论被用于从电子结构的基本原理出发,对 P450 机制及其自旋态选择性进行合理化解释,并使用反应物易于获得的性质(单重态-三重态激发能、芳烃的电离势以及 Cpd I 和/或甲氧基自由基的电子亲合势)独立预测活化能。结果表明,价键模型合理地解释了所有的反应机制,并对 35 个反应的活化能进行了预测,与 DFT 计算得到的活化能相比,其平均偏差为±1.0 kcal·mol(-1)(参见:Bathelt, C. M.; Ridder, L.; Mulholland, A. J.; Harvey, J. N. Org. Biomol. Chem. 2004, 2, 2998-3005)。价键模型还揭示了 P450 Cpd I 和甲氧基反应之间的相似性,并且能够对来自其他研究的反应的能垒进行预测。