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利用转录组学和蛋白质组学解析栉孔扇贝(Pecten maximus)对热应激的分子适应性

Deciphering the molecular adaptation of the king scallop (Pecten maximus) to heat stress using transcriptomics and proteomics.

作者信息

Artigaud Sébastien, Richard Joëlle, Thorne Michael A S, Lavaud Romain, Flye-Sainte-Marie Jonathan, Jean Fred, Peck Lloyd S, Clark Melody S, Pichereau Vianney

机构信息

Laboratoire des Sciences de l'Environnement Marin, LEMAR UMR 6539 CNRS/UBO/IRD/Ifremer, Université de Brest (UBO), Institut Universitaire Européen de la Mer, Plouzané, 29280, France.

British Antarctic Survey, Natural Environment Research Council, High Cross, Madingley Road, Cambridge, CB3 0ET, UK.

出版信息

BMC Genomics. 2015 Nov 23;16:988. doi: 10.1186/s12864-015-2132-x.

Abstract

BACKGROUND

The capacity of marine species to survive chronic heat stress underpins their ability to survive warming oceans as a result of climate change. In this study RNA-Seq and 2-DE proteomics were employed to decipher the molecular response of the sub-tidal bivalve Pecten maximus, to elevated temperatures.

RESULTS

Individuals were maintained at three different temperatures (15, 21 and 25 °C) for 56 days, representing control conditions, maximum environmental temperature and extreme warming, with individuals sampled at seven time points. The scallops thrived at 21 °C, but suffered a reduction in condition at 25 °C. RNA-Seq analyses produced 26,064 assembled contigs, of which 531 were differentially expressed, with putative annotation assigned to 177 transcripts. The proteomic approach identified 24 differentially expressed proteins, with nine identified by mass spectrometry. Network analysis of these results indicated a pivotal role for GAPDH and AP-1 signalling pathways. Data also suggested a remodelling of the cell structure, as revealed by the differential expression of genes involved in the cytoskeleton and cell membrane and a reduction in DNA repair. They also indicated the diversion of energetic metabolism towards the mobilization of lipid energy reserves to fuel the increased metabolic rate at the higher temperature.

CONCLUSIONS

This work provides preliminary insights into the response of P. maximus to chronic heat stress and provides a basis for future studies examining the tipping points and energetic trade-offs of scallop culture in warming oceans.

摘要

背景

海洋物种在长期热应激下的生存能力,是其在气候变化导致海洋变暖情况下生存的基础。在本研究中,采用RNA测序和二维蛋白质组学技术来解读潮下带双壳贝类大扇贝对温度升高的分子反应。

结果

将个体置于三种不同温度(15、21和25°C)下56天,分别代表对照条件、环境最高温度和极端变暖情况,并在七个时间点对个体进行采样。扇贝在21°C时生长良好,但在25°C时状况变差。RNA测序分析产生了26,064个组装重叠群,其中531个差异表达,177个转录本有推定注释。蛋白质组学方法鉴定出24个差异表达蛋白,其中9个通过质谱鉴定。对这些结果的网络分析表明甘油醛-3-磷酸脱氢酶(GAPDH)和活化蛋白-1(AP-1)信号通路起关键作用。数据还表明细胞结构发生重塑,这通过参与细胞骨架和细胞膜的基因差异表达以及DNA修复减少得以体现。数据还表明能量代谢转向动员脂质能量储备,以满足较高温度下增加的代谢率。

结论

本研究为大扇贝对长期热应激的反应提供了初步见解,并为未来研究海洋变暖情况下扇贝养殖的临界点和能量权衡奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d4c2/4657243/2e685ec1215e/12864_2015_2132_Fig1_HTML.jpg

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