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气态半胱氨酸的构象异构体

Conformers of Gaseous Cysteine.

作者信息

Wilke Jeremiah J, Lind Maria C, Schaefer Henry F, Császár Attila G, Allen Wesley D

机构信息

Department of Chemistry and Center for Computational Chemistry, University of Georgia, Athens, Georgia 30602, and Laboratory of Molecular Spectroscopy, Institute of Chemistry, Eötvös University, H-1518 Budapest 112, P.O. Box 32, Hungary.

出版信息

J Chem Theory Comput. 2009 Jun 9;5(6):1511-23. doi: 10.1021/ct900005c. Epub 2009 May 15.

Abstract

Structures, accurate relative energies, equilibrium and vibrationally averaged rotational constants, quartic and sextic centrifugal distortion constants, dipole moments, (14)N nuclear quadrupole coupling constants, anharmonic vibrational frequencies, and double-harmonic infrared intensities have been determined from ab initio electronic structure computations for conformers of the neutral form of the natural amino acid l-cysteine (Cys). A systematic scan located 71 unique conformers of Cys using the MP2(FC)/cc-pVTZ method. The large number of structurally diverse low-energy conformers of Cys necessitates the highest possible levels of electronic structure theory to determine their relative energies with some certainty. For this reason, we determined the relative energies of the lowest-energy eleven conformers, accurate within a standard error (1σ) of about 0.3 kJ mol(-1), through first-principles composite focal-point analyses (FPA), which employed extrapolations using basis sets as large as aug-cc-pV(5+d)Z and correlation treatments as extensive as CCSD(T). Three and eleven conformers of l-cysteine fall within a relative energy of 6 and 10 kJ mol(-1), respectively. The vibrationally averaged rotational constants computed in this study agree well with Fourier-transform microwave spectroscopy results. The effects determining the relative energies of the low-energy conformers of cysteine are analyzed in detail on the basis of hydrogen bond additivity schemes and natural bond orbital analysis.

摘要

通过从头算电子结构计算,确定了天然氨基酸L-半胱氨酸(Cys)中性形式构象异构体的结构、精确相对能量、平衡和振动平均转动常数、四次和六次离心畸变常数、偶极矩、(14)N核四极耦合常数、非谐振动频率以及双谐红外强度。使用MP2(FC)/cc-pVTZ方法进行系统扫描,定位到了71个Cys的独特构象异构体。Cys大量结构多样的低能量构象异构体需要尽可能高的电子结构理论水平,才能较为确定地确定它们的相对能量。因此,我们通过第一性原理复合焦点分析(FPA)确定了最低能量的11个构象异构体的相对能量,其标准误差(1σ)约为0.3 kJ mol(-1),该分析采用了高达aug-cc-pV(5+d)Z的基组外推和高达CCSD(T)的广泛相关处理。L-半胱氨酸分别有3个和11个构象异构体的相对能量在6和10 kJ mol(-1)以内。本研究中计算的振动平均转动常数与傅里叶变换微波光谱结果吻合良好。基于氢键加和方案和自然键轨道分析,详细分析了决定半胱氨酸低能量构象异构体相对能量的因素。

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