Kühne Thomas D, Krack Matthias, Parrinello Michele
Computational Science, Department of Chemistry and Applied Biosciences, ETH Zurich, USI Campus, Via Giuseppe Buffi 13, CH-6900 Lugano, Switzerland.
J Chem Theory Comput. 2009 Feb 10;5(2):235-41. doi: 10.1021/ct800417q. Epub 2009 Jan 9.
Using the recently developed Car-Parrinello-like approach to Born-Oppenheimer molecular dynamics ( Kühne, T. D. ; et al. Phys. Rev. Lett. 2007 , 98 , 066401. ), we assess the accuracy of ab initio molecular dynamics at the semilocal density functional level of theory to describe structural and dynamic properties of liquid water at ambient conditions. We have performed a series of large-scale simulations using a number of parameter-free exchange and correlation functionals, to minimize and investigate the influence of finite size effects as well as statistical errors. We find that finite size effects in structural properties are rather small and, given an extensive sampling, reproducible. On the other hand, the influence of finite size effects on dynamical properties are much larger than generally appreciated. So much so that the infinite size limit is practically out of reach. However, using a finite size scaling procedure, thanks to the greater effectiveness of our new method we can estimate both the thermodynamic value of the diffusion coefficient and the shear viscosity. The hydrogen bond network structure and its kinetics are consistent with the conventional view of tetrahedrally coordinated water.
利用最近开发的类似Car-Parrinello的玻恩-奥本海默分子动力学方法(库内,T.D.等人,《物理评论快报》,2007年,98卷,066401),我们评估了在半局域密度泛函理论水平下从头算分子动力学描述环境条件下液态水结构和动力学性质的准确性。我们使用了多种无参数交换关联泛函进行了一系列大规模模拟,以最小化并研究有限尺寸效应以及统计误差的影响。我们发现结构性质中的有限尺寸效应相当小,并且在进行广泛采样的情况下是可重现的。另一方面,有限尺寸效应在动力学性质上的影响比一般认为的要大得多。以至于实际上无法达到无限尺寸极限。然而,通过使用有限尺寸标度程序,由于我们新方法的更高有效性,我们能够估计扩散系数的热力学值和剪切粘度。氢键网络结构及其动力学与四面体配位水的传统观点一致。