Physikalisches Institut, Universität Freiburg, Hermann-Herder-Strasse 3, 79104 Freiburg, Germany.
Université de Bordeaux and CNRS, Laboratoire Ondes et Matière d'Aquitaine (LOMA), UMR 5798, 33400 Talence, France.
Phys Rev Lett. 2015 Nov 13;115(20):208301. doi: 10.1103/PhysRevLett.115.208301. Epub 2015 Nov 9.
We consider the kinetics of first contact between two monomers of the same macromolecule. Relying on a fractal description of the macromolecule, we develop an analytical method to compute the mean first contact time for various molecular sizes. In our theoretical description, the non-Markovian feature of monomer motion, arising from the interactions with the other monomers, is captured by accounting for the nonequilibrium conformations of the macromolecule at the very instant of first contact. This analysis reveals a simple scaling relation for the mean first contact time between two monomers, which involves only their equilibrium distance and the spectral dimension of the macromolecule, independently of its microscopic details. Our theoretical predictions are in excellent agreement with numerical stochastic simulations.
我们研究了同一种大分子的两个单体之间首次接触的动力学。基于大分子的分形描述,我们开发了一种分析方法来计算各种分子尺寸的平均首次接触时间。在我们的理论描述中,单体运动的非马尔可夫特征源于与其他单体的相互作用,通过在首次接触的瞬间考虑大分子的非平衡构象来捕捉。这种分析揭示了两个单体之间平均首次接触时间的简单标度关系,它只涉及它们的平衡距离和大分子的谱维,而与微观细节无关。我们的理论预测与数值随机模拟非常吻合。