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后 GWAS 时代的糖尿病。

Diabetes in the post-GWAS era.

机构信息

The Endocrine Genetics Laboratory, Child Health and Human Development Program and Department of Pediatrics, McGill University Health Centre Research Institute, Montreal, Quebec, Canada.

出版信息

Nat Genet. 2015 Dec;47(12):1373-4. doi: 10.1038/ng.3453.

DOI:10.1038/ng.3453
PMID:26620109
Abstract

Large sample sizes, high-resolution arrays and comprehensive imputation are pushing genetic fine-mapping of complex trait loci to its limits without, in most cases, pinpointing a unique variant-gene combination. Superimposing these results on sophisticated maps of functional chromatin elements promises to break this logjam, as a new study of type 2 diabetes compellingly demonstrates.

摘要

大样本量、高分辨率阵列和全面的插补正在将复杂性状基因座的遗传精细定位推向极限,但在大多数情况下,仍无法确定独特的变异-基因组合。将这些结果叠加在功能染色质元件的复杂图谱上有望打破这一僵局,正如 2 型糖尿病的一项新研究有力地证明的那样。

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Diversity and inclusion in genomic research: why the uneven progress?

本文引用的文献

1
Genetic fine mapping and genomic annotation defines causal mechanisms at type 2 diabetes susceptibility loci.基因精细定位和基因组注释确定了2型糖尿病易感位点的致病机制。
Nat Genet. 2015 Dec;47(12):1415-25. doi: 10.1038/ng.3437. Epub 2015 Nov 9.
2
Recent advances in understanding the genetic architecture of type 2 diabetes.2型糖尿病遗传结构认识的最新进展
Hum Mol Genet. 2015 Oct 15;24(R1):R85-92. doi: 10.1093/hmg/ddv264. Epub 2015 Jul 9.
3
Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.
基因组研究中的多样性与包容性:为何进展参差不齐?
J Community Genet. 2017 Oct;8(4):255-266. doi: 10.1007/s12687-017-0316-6. Epub 2017 Jul 18.
4
HASE: Framework for efficient high-dimensional association analyses.HASE:高效高维关联分析框架
Sci Rep. 2016 Oct 26;6:36076. doi: 10.1038/srep36076.
1型糖尿病易感基因座的精细定位以及因果变异与淋巴样基因增强子共定位的证据。
Nat Genet. 2015 Apr;47(4):381-6. doi: 10.1038/ng.3245. Epub 2015 Mar 9.
4
Genetic and epigenetic fine mapping of causal autoimmune disease variants.遗传和表观遗传精细定位因果自身免疫疾病变异。
Nature. 2015 Feb 19;518(7539):337-43. doi: 10.1038/nature13835. Epub 2014 Oct 29.
5
Pancreatic islet enhancer clusters enriched in type 2 diabetes risk-associated variants.富含 2 型糖尿病风险相关变异的胰岛增强子簇。
Nat Genet. 2014 Feb;46(2):136-143. doi: 10.1038/ng.2870. Epub 2014 Jan 12.
6
Genetics of rheumatoid arthritis contributes to biology and drug discovery.类风湿关节炎的遗传学研究有助于生物学和药物发现。
Nature. 2014 Feb 20;506(7488):376-81. doi: 10.1038/nature12873. Epub 2013 Dec 25.
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Chromatin stretch enhancer states drive cell-specific gene regulation and harbor human disease risk variants.染色质伸展增强子状态驱动细胞特异性基因调控,并包含人类疾病风险变异。
Proc Natl Acad Sci U S A. 2013 Oct 29;110(44):17921-6. doi: 10.1073/pnas.1317023110. Epub 2013 Oct 14.
8
Chromatin marks identify critical cell types for fine mapping complex trait variants.染色质标记可鉴定精细定位复杂性状变异的关键细胞类型。
Nat Genet. 2013 Feb;45(2):124-30. doi: 10.1038/ng.2504. Epub 2012 Dec 23.
9
An integrated encyclopedia of DNA elements in the human genome.人类基因组中 DNA 元件的综合百科全书。
Nature. 2012 Sep 6;489(7414):57-74. doi: 10.1038/nature11247.
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The metabochip, a custom genotyping array for genetic studies of metabolic, cardiovascular, and anthropometric traits.代谢芯片,一种用于代谢、心血管和人体测量特征遗传研究的定制基因分型阵列。
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