Ufimtsev Ivan S, Martinez Todd J
Department of Chemistry, Stanford University, Stanford, California 94305.
J Chem Theory Comput. 2009 Oct 13;5(10):2619-28. doi: 10.1021/ct9003004. Epub 2009 Aug 25.
We demonstrate that a video gaming machine containing two consumer graphical cards can outpace a state-of-the-art quad-core processor workstation by a factor of more than 180× in Hartree-Fock energy + gradient calculations. Such performance makes it possible to run large scale Hartree-Fock and Density Functional Theory calculations, which typically require hundreds of traditional processor cores, on a single workstation. Benchmark Born-Oppenheimer molecular dynamics simulations are performed on two molecular systems using the 3-21G basis set - a hydronium ion solvated by 30 waters (94 atoms, 405 basis functions) and an aspartic acid molecule solvated by 147 waters (457 atoms, 2014 basis functions). Our GPU implementation can perform 27 ps/day and 0.7 ps/day of ab initio molecular dynamics simulation on a single desktop computer for these systems.
我们证明,在进行哈特里-福克能量+梯度计算时,一台配备两块消费级图形卡的视频游戏机的速度比一台最先进的四核处理器工作站快180多倍。这样的性能使得在单个工作站上运行大规模的哈特里-福克和密度泛函理论计算成为可能,而这些计算通常需要数百个传统处理器核心。使用3-21G基组对两个分子系统进行了基准玻恩-奥本海默分子动力学模拟——一个由30个水分子溶剂化的水合氢离子(94个原子,405个基函数)和一个由147个水分子溶剂化的天冬氨酸分子(457个原子,2014个基函数)。对于这些系统,我们的GPU实现可以在一台台式计算机上每天执行27皮秒和0.7皮秒的从头算分子动力学模拟。