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通过加速度计解读行为:一种兼具简单性与客观性的方法。

Interpreting behaviors from accelerometry: a method combining simplicity and objectivity.

作者信息

Collins Philip M, Green Jonathan A, Warwick-Evans Victoria, Dodd Stephen, Shaw Peter J A, Arnould John P Y, Halsey Lewis G

机构信息

School of Life Sciences University of Roehampton Holybourne Avenue London SW15 4JD United Kingdom.

School of Environmental Sciences University of Liverpool Liverpool L69 3GP United Kingdom.

出版信息

Ecol Evol. 2015 Oct 2;5(20):4642-54. doi: 10.1002/ece3.1660. eCollection 2015 Oct.

Abstract

Quantifying the behavior of motile, free-ranging animals is difficult. The accelerometry technique offers a method for recording behaviors but interpretation of the data is not straightforward. To date, analysis of such data has either involved subjective, study-specific assignments of behavior to acceleration data or the use of complex analyses based on machine learning. Here, we present a method for automatically classifying acceleration data to represent discrete, coarse-scale behaviors. The method centers on examining the shape of histograms of basic metrics readily derived from acceleration data to objectively determine threshold values by which to separate behaviors. Through application of this method to data collected on two distinct species with greatly differing behavioral repertoires, kittiwakes, and humans, the accuracy of this approach is demonstrated to be very high, comparable to that reported for other automated approaches already published. The method presented offers an alternative to existing methods as it uses biologically grounded arguments to distinguish behaviors, it is objective in determining values by which to separate these behaviors, and it is simple to implement, thus making it potentially widely applicable. The R script coding the method is provided.

摘要

量化活动的、自由活动动物的行为是困难的。加速度测量技术提供了一种记录行为的方法,但数据的解释并不简单。迄今为止,对此类数据的分析要么涉及对加速度数据进行主观的、特定研究的行为赋值,要么使用基于机器学习的复杂分析。在这里,我们提出了一种自动对加速度数据进行分类以表示离散的、粗尺度行为的方法。该方法的核心是检查从加速度数据中容易得出的基本指标的直方图形状,以客观地确定分离行为的阈值。通过将该方法应用于从行为模式差异很大的两个不同物种(三趾鸥和人类)收集的数据,证明了这种方法的准确性非常高,与已发表的其他自动化方法所报告的准确性相当。所提出的方法为现有方法提供了一种替代方案,因为它使用基于生物学的论据来区分行为,在确定分离这些行为的数值时是客观的,并且易于实施,因此可能具有广泛的适用性。本文提供了编码该方法的R脚本。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ff4/4670056/4433f8670ca3/ECE3-5-4642-g001.jpg

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