Zhang Shuang, Liu Yu-jing, Wu Yan-sheng, Cao Ying, Yuan Yuan
Zhongguo Zhong Yao Za Zhi. 2015 Aug;40(15):2964-9.
DNA barcoding is an effective technique in species identification. To determine the candidate sequences which can be used as DNA barcode to identify in Papaver genus, five potential sequences (ITS, matK, psbA-trnH, rbcL, trnL-trnF) were screened. 69 sequences were downloaded from Genbank, including 21 ITS sequences, 10 matK sequences, 8 psbA-trnH sequences, 14 rbcL sequences and 16 trnL-trnF sequences. Mega 6.0 was used to analysis the comparison of sequences. By the methods of calculating the distances in intraspecific and interspecific divergences, evaluating DNA barcoding gap and constructing NJ and UPMGA phylogenetic trees. The sequence trnL-trnF performed best. In conclusion, trnL-trnF can be considered as a novel DNA barcode in Papaver genus, other four sequences can be as combination barcode for identification.
DNA条形码是一种有效的物种鉴定技术。为了确定可作为DNA条形码用于鉴定罂粟属植物的候选序列,筛选了五个潜在序列(ITS、matK、psbA-trnH、rbcL、trnL-trnF)。从Genbank下载了69个序列,包括21个ITS序列、10个matK序列、8个psbA-trnH序列、14个rbcL序列和16个trnL-trnF序列。使用Mega 6.0分析序列比对。通过计算种内和种间差异距离、评估DNA条形码间隙以及构建NJ和UPMGA系统发育树的方法。序列trnL-trnF表现最佳。总之,trnL-trnF可被视为罂粟属植物的一种新型DNA条形码,其他四个序列可作为组合条形码用于鉴定。