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CASSIS and SMIPS: promoter-based prediction of secondary metabolite gene clusters in eukaryotic genomes.CASSIS和SMIPS：基于启动子的真核生物基因组中次生代谢物基因簇预测
Bioinformatics. 2016 Apr 15;32(8):1138-43. doi: 10.1093/bioinformatics/btv713. Epub 2015 Dec 9.
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antiSMASH 3.0-a comprehensive resource for the genome mining of biosynthetic gene clusters.antiSMASH 3.0——用于生物合成基因簇基因组挖掘的综合资源。
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Genome mining reveals unlocked bioactive potential of marine Gram-negative bacteria.基因组挖掘揭示了海洋革兰氏阴性菌未开发的生物活性潜力。
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Blobology: exploring raw genome data for contaminants, symbionts and parasites using taxon-annotated GC-coverage plots.块状体学：使用分类群注释的 GC 覆盖图探索原始基因组数据中的污染物、共生体和寄生虫。
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Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.Assemblathon2：在三个脊椎动物物种中评估从头组装基因组方法。
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An integrated pipeline for de novo assembly of microbial genomes.用于从头组装微生物基因组的集成管道。
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Biofilms and marine invertebrate larvae: what bacteria produce that larvae use to choose settlement sites.生物膜与海洋无脊椎动物幼虫：细菌产生的物质能被幼虫用于选择定殖地点。
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Analysis of the Pseudoalteromonas tunicata genome reveals properties of a surface-associated life style in the marine environment.对海鞘假交替单胞菌基因组的分析揭示了其在海洋环境中与表面相关的生活方式的特性。
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Bioactive compound synthetic capacity and ecological significance of marine bacterial genus pseudoalteromonas.海洋假交替单胞菌属的生物活性化合物合成能力及生态意义。
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六种交替假单胞菌菌株P1-7a、P1-9、P1-13-1a、P1-16-1b、P1-25和P1-26的基因组序列草图，这些菌株可诱导海葵幼虫附着和变态

Draft Genome Sequences of Six Pseudoalteromonas Strains, P1-7a, P1-9, P1-13-1a, P1-16-1b, P1-25, and P1-26, Which Induce Larval Settlement and Metamorphosis in Hydractinia echinata.

作者信息

Klassen Jonathan L, Wolf Thomas, Rischer Maja, Guo Huijuan, Shelest Ekaterina, Clardy Jon, Beemelmanns Christine

机构信息

University of Connecticut, Department of Molecular & Cell Biology, Storrs, Connecticut, USA.

Leibniz Institute for Natural Product Research and Infection Biology eV, Jena, Germany.

出版信息

Genome Announc. 2015 Dec 17;3(6):e01477-15. doi: 10.1128/genomeA.01477-15.

DOI:10.1128/genomeA.01477-15
PMID:26679587
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4683232/
Abstract

To gain a broader understanding of the importance of a surface-associated lifestyle and morphogenic capability, we have assembled and annotated the genome sequences of Pseudoalteromonas strains P1-7a, P1-9, P1-13-1a, P1-16-1b, P1-25, and P1-26, isolated from Hydractinia echinata. These genomes will allow detailed studies on bacterial factors mediating interkingdom communication.

摘要

为了更广泛地了解表面相关生活方式和形态发生能力的重要性，我们组装并注释了从刺胞软珊瑚（Hydractinia echinata）中分离出的假交替单胞菌（Pseudoalteromonas）菌株P1-7a、P1-9、P1-13-1a、P1-16-1b、P1-25和P1-26的基因组序列。这些基因组将有助于对介导跨界通讯的细菌因子进行详细研究。