Laboratório de Imunoquímica, Instituto Butantan, São Paulo, S.P., Brazil.
Departamento de Genética e Biologia Evolutiva, Instituto de Biociências, Universidade de São Paulo, São Paulo, S.P., Brazil.
BMC Evol Biol. 2015 Dec 21;15:290. doi: 10.1186/s12862-015-0561-4.
Sphingomyelinase D is the main toxin present in the venom of Loxosceles spiders. Several isoforms present in these venoms can be structurally classified in two groups. Class I Sphingomyelinase D contains a single disulphide bridge and variable loop. Class II Sphingomyelinase D presents an additional intrachain disulphide bridge that links a flexible loop with a catalytic loop. These classes exhibit differences in their toxic potential. In this paper we address the distribution of the structural classes of SMase D within and among species of spiders and also their evolutionary origin by means of phylogenetic analyses. We also conducted tests to assess the action of natural selection in their evolution combined to structural modelling of the affected sites.
The majority of the Class I enzymes belong to the same clade, which indicates a recent evolution from a single common ancestor. Positively selected sites are located on the catalytic interface, which contributes to a distinct surface charge distribution between the classes. Sites that may prevent the formation of an additional bridge were found in Class I enzymes.
The evolution of Sphingomyelinase D has been driven by natural selection toward an increase in noxiousness, and this might help explain the toxic variation between classes.
神经鞘磷脂酶 D 是在狼蛛毒液中存在的主要毒素。这些毒液中的几种同工酶在结构上可分为两类。I 类神经鞘磷脂酶 D 含有一个单一的二硫键和可变环。II 类神经鞘磷脂酶 D 具有一个额外的链内二硫键,连接一个柔性环和一个催化环。这些类在其毒性潜力上表现出差异。在本文中,我们通过系统发育分析来研究 SMase D 的结构类在蜘蛛属内和种间的分布情况,以及它们的进化起源。我们还进行了测试,以评估自然选择在它们进化过程中的作用,同时结合受影响部位的结构建模。
大多数 I 类酶属于同一个分支,这表明它们是从一个单一的共同祖先最近进化而来的。正选择的位点位于催化界面上,这有助于在两类之间形成独特的表面电荷分布。在 I 类酶中发现了可能阻止形成额外桥的位点。
神经鞘磷脂酶 D 的进化是由自然选择驱动的,目的是增加毒性,这可能有助于解释两类之间的毒性变异。