Niederberger Thomas D, Sohm Jill A, Gunderson Troy, Tirindelli Joëlle, Capone Douglas G, Carpenter Edward J, Cary S Craig
College of Marine and Earth Sciences, University of Delaware Lewes, DE, USA.
Wrigley Institute of Environmental Studies and Department of Biological Science, University of Southern California Los Angeles, CA, USA.
Front Microbiol. 2015 Dec 9;6:1347. doi: 10.3389/fmicb.2015.01347. eCollection 2015.
Carbon-fixation is a critical process in severely oligotrophic Antarctic Dry Valley (DV) soils and may represent the major source of carbon in these arid environments. However, rates of C-fixation in DVs are currently unknown and the microorganisms responsible for these activities unidentified. In this study, C-fixation rates measured in the bulk arid soils (<5% moisture) ranged from below detection limits to ∼12 nmol C/cc/h. Rates in ephemerally wet soils ranged from ∼20 to 750 nmol C/cc/h, equating to turnover rates of ∼7-140 days, with lower rates in stream-associated soils as compared to lake-associated soils. Sequencing of the large subunit of RuBisCO (cbbL) in these soils identified green-type sequences dominated by the 1B cyanobacterial phylotype in both arid and wet soils including the RNA fraction of the wet soil. Red-type cbbL genes were dominated by 1C actinobacterial phylotypes in arid soils, with wetted soils containing nearly equal proportions of 1C (actinobacterial and proteobacterial signatures) and 1D (algal) phylotypes. Complementary 16S rRNA and 18S rRNA gene sequencing also revealed distinct differences in community structure between biotopes. This study is the first of its kind to examine C-fixation rates in DV soils and the microorganisms potentially responsible for these activities.
碳固定是南极极度贫营养干旱河谷(DV)土壤中的一个关键过程,可能是这些干旱环境中碳的主要来源。然而,目前尚不清楚干旱河谷中的碳固定速率,也未鉴定出负责这些活动的微生物。在本研究中,在大量干旱土壤(湿度<5%)中测得的碳固定速率范围从低于检测限到约12 nmol C/cc/h。短暂湿润土壤中的速率范围为约20至750 nmol C/cc/h,相当于约7 - 140天的周转率,与湖泊相关土壤相比,河流相关土壤中的速率较低。对这些土壤中核酮糖-1,5-二磷酸羧化酶/加氧酶(RuBisCO)大亚基(cbbL)进行测序,在干旱和湿润土壤(包括湿润土壤的RNA部分)中均鉴定出以1B蓝藻菌系为主的绿色型序列。在干旱土壤中,红色型cbbL基因以1C放线菌菌系为主,湿润土壤中1C(放线菌和变形菌特征)和1D(藻类)菌系的比例几乎相等。互补的16S rRNA和18S rRNA基因测序也揭示了不同生物群落之间群落结构的明显差异。本研究首次对干旱河谷土壤中的碳固定速率以及可能负责这些活动的微生物进行了研究。