Department of Biological Sciences, University of Waikato, Hamilton, New Zealand.
ISME J. 2012 May;6(5):1046-57. doi: 10.1038/ismej.2011.170. Epub 2011 Dec 15.
Recent applications of molecular genetics to edaphic microbial communities of the McMurdo Dry Valleys and elsewhere have rejected a long-held belief that Antarctic soils contain extremely limited microbial diversity. The Inter-Valley Soil Comparative Survey aims to elucidate the factors shaping these unique microbial communities and their biogeography by integrating molecular genetic approaches with biogeochemical analyses. Although the microbial communities of Dry Valley soils may be complex, there is little doubt that the ecosystem's food web is relatively simple, and evidence suggests that physicochemical conditions may have the dominant role in shaping microbial communities. To examine this hypothesis, bacterial communities from representative soil samples collected in four geographically disparate Dry Valleys were analyzed using molecular genetic tools, including pyrosequencing of 16S rRNA gene PCR amplicons. Results show that the four communities are structurally and phylogenetically distinct, and possess significantly different levels of diversity. Strikingly, only 2 of 214 phylotypes were found in all four valleys, challenging a widespread assumption that the microbiota of the Dry Valleys is composed of a few cosmopolitan species. Analysis of soil geochemical properties indicated that salt content, alongside altitude and Cu(2+), was significantly correlated with differences in microbial communities. Our results indicate that the microbial ecology of Dry Valley soils is highly localized and that physicochemical factors potentially have major roles in shaping the microbiology of ice-free areas of Antarctica. These findings hint at links between Dry Valley glacial geomorphology and microbial ecology, and raise previously unrecognized issues related to environmental management of this unique ecosystem.
近年来,分子遗传学在麦克默多干谷和其他地区的土壤微生物群落中的应用,否定了长期以来人们认为南极土壤中微生物多样性极其有限的观点。跨谷土壤比较调查旨在通过整合分子遗传学方法和生物地球化学分析,阐明塑造这些独特微生物群落及其生物地理学的因素。尽管干谷土壤中的微生物群落可能很复杂,但毫无疑问,生态系统的食物网相对简单,有证据表明物理化学条件可能在塑造微生物群落方面发挥主导作用。为了检验这一假设,对从四个地理位置不同的干谷中采集的代表性土壤样本中的细菌群落进行了分析,使用了包括 16S rRNA 基因 PCR 扩增子焦磷酸测序在内的分子遗传学工具。结果表明,四个群落在结构和系统发育上存在明显差异,并且具有显著不同的多样性水平。引人注目的是,在所有四个山谷中仅发现了 214 个类群中的 2 个,这挑战了一个广泛的假设,即干谷的微生物群由少数世界性物种组成。对土壤地球化学性质的分析表明,盐含量与海拔和 Cu(2+)一起,与微生物群落的差异显著相关。我们的研究结果表明,干谷土壤的微生物生态学具有高度的本地化特征,物理化学因素可能在塑造南极洲无冰区的微生物学方面发挥主要作用。这些发现暗示了干谷冰川地貌与微生物生态学之间的联系,并提出了与这个独特生态系统的环境管理相关的以前未被认识到的问题。