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本文引用的文献

1
Full-length transcriptome assembly from RNA-Seq data without a reference genome.无参考基因组的 RNA-Seq 数据的全长转录组组装。
Nat Biotechnol. 2011 May 15;29(7):644-52. doi: 10.1038/nbt.1883.
2
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research.Blast2GO：功能基因组学研究中用于注释、可视化和分析的通用工具。
Bioinformatics. 2005 Sep 15;21(18):3674-6. doi: 10.1093/bioinformatics/bti610. Epub 2005 Aug 4.
3
Tissue and intracellular localization of indican and the purification and characterization of indican synthase from indigo plants.靛蓝植物中吲哚苷的组织和细胞内定位以及吲哚苷合酶的纯化与特性分析
Plant Cell Physiol. 2000 Feb;41(2):218-25. doi: 10.1093/pcp/41.2.218.

对木蓝和蓼蓝中靛蓝生物合成途径基因的RNA测序分析。

RNA-Seq analysis for indigo biosynthesis pathway genes in Indigofera tinctoria and Polygonum tinctorium.

作者信息

Sarangi Bijaya K, Minami Yoshiko, Thul Sanjog T

机构信息

Environmental Biotechnology Division, CSIR, National Environmental Engineering Research Institute, Nehru Marg, Nagpur 440020, India.

Department of Biochemistry, Okayama University of Science, Japan.

出版信息

Genom Data. 2015 Oct 5;6:212-3. doi: 10.1016/j.gdata.2015.09.021. eCollection 2015 Dec.

DOI:10.1016/j.gdata.2015.09.021
PMID:26697377
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4664758/
Abstract

Natural indigo is the most important blue dye for textile dyeing and valuable secondary metabolite biosynthesized in Indigofera tinctoria and Polygonum tinctorium plants. Present investigation is made to generation of gene resource for pathway enrichment and to understand possible gene expression involved in indigo biosynthesis. The data about raw reads and the transcriptome assembly project has been deposited at GenBank under the accessions SRA180766 and SRX692542 for I. tinctoria and P. tinctorium, respectively.

摘要

天然靛蓝是用于纺织品染色的最重要的蓝色染料，是在木蓝属植物和蓼蓝植物中生物合成的有价值的次生代谢产物。目前的研究旨在生成用于途径富集的基因资源，并了解参与靛蓝生物合成的可能基因表达。关于原始读数和转录组组装项目的数据已分别以登录号SRA180766和SRX692542存入GenBank，分别对应木蓝属植物和蓼蓝植物。