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小单层囊泡熔化动力学的粗粒度分子模拟

Coarse-grained molecular simulations of the melting kinetics of small unilamellar vesicles.

作者信息

Patel Lara A, Kindt James T

机构信息

Emory University, Chemistry Department, 1515 Dickey Drive, Atlanta, GA 30322, USA.

出版信息

Soft Matter. 2016 Feb 14;12(6):1765-77. doi: 10.1039/c5sm02560e. Epub 2015 Dec 24.

DOI:10.1039/c5sm02560e
PMID:26701014
Abstract

Simulations of small unilamellar lipid bilayer vesicles have been performed to model their response to an instantaneous rise in temperature, starting from an initial low-temperature structure, to temperatures near or above the main chain transition temperature. The MARTINI coarse-grained force-field was used to construct slabs of gel-phase DPPC bilayers, which were assembled into truncated icosahedral structures containing 13,165 or 31,021 lipids. Equilibration at 280 K produced structures with several (5-8) domains, characterized by facets of lipids packed in the gel phase connected by disordered ridges. Instantaneous heating to final temperatures ranging from 290 K to 310 K led to partial or total melting over 500 ns trajectories, accompanied by changes in vesicle shape and the sizes and arrangements of remaining gel-phase domains. At temperatures that produced partial melting, the gel-phase lipid content of the vesicles followed an exponential decay, similar in form and timescale to the sub-microsecond phase of melting kinetics observed in recent ultrafast IR temperature-jump experiments. The changing rate of melting appears to be the outcome of a number of competing contributions, but changes in curvature stress arising from the expansion of the bilayer area upon melting are a major factor. The simulations give a more detailed picture of the changes that occur in frozen vesicles following a temperature jump, which will be of use for the interpretation of temperature-jump experiments on vesicles.

摘要

已经进行了小单层脂质双层囊泡的模拟,以模拟它们从初始低温结构开始,对温度瞬间升高到接近或高于主链转变温度时的响应。使用MARTINI粗粒化力场构建凝胶相DPPC双层平板,将其组装成包含13165或31021个脂质的截顶二十面体结构。在280 K下平衡产生具有几个(5 - 8个)结构域的结构,其特征是由无序脊连接的凝胶相中堆积的脂质小平面。瞬间加热到290 K至310 K的最终温度导致在500 ns轨迹上部分或完全熔化,伴随着囊泡形状以及剩余凝胶相结构域的大小和排列的变化。在产生部分熔化的温度下,囊泡的凝胶相脂质含量遵循指数衰减,其形式和时间尺度与最近超快红外温度跳跃实验中观察到的亚微秒级熔化动力学阶段相似。熔化速率的变化似乎是多种竞争因素的结果,但熔化时双层面积膨胀引起的曲率应力变化是一个主要因素。这些模拟给出了温度跳跃后冷冻囊泡中发生变化的更详细图像,这将有助于解释囊泡的温度跳跃实验。

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