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新种,一种从海洋地下沉积物中分离出的利用氨基酸的厌氧细菌。

sp. nov., an anaerobic, amino-acid-utilizing bacterium isolated from marine subsurface sediment.

作者信息

Imachi Hiroyuki, Sakai Sanae, Kubota Takaaki, Miyazaki Masayuki, Saito Yayoi, Takai Ken

机构信息

Research and Development Center for Marine Resources,JAMSTEC, Kanagawa 237-0061,Japan.

Department of Subsurface Geobiological Analysis and Research (D-SUGAR), Japan Agency for Marine-Earth Science & Technology (JAMSTEC),Yokosuka, Kanagawa 237-0061,Japan.

出版信息

Int J Syst Evol Microbiol. 2016 Mar;66(3):1293-1300. doi: 10.1099/ijsem.0.000878. Epub 2016 Jan 5.

Abstract

A novel, anaerobic bacterium, strain MO-SEDI, was isolated from a methanogenic microbial community, which was originally obtained from marine subsurface sediments collected from off the Shimokita Peninsula of Japan. Cells were Gram-stain-negative, non-motile, non-spore-forming rods, 0.4-1.4 μm long by 0.4-0.6 μm wide. The cells also formed long filaments of up to about 11 μm. The strain grew on amino acids (i.e. valine, leucine, isoleucine, methionine, glycine, phenylalanine, tryptophan, lysine and arginine), pyruvate and melezitose in the presence of yeast extract. Growth was observed at 4-37 °C (optimally at 30 °C), at pH 6.0 and 8.5 (optimally at 7.0-7.5) and in 0-60 g l NaCl (optimally 20 g NaCl l). The G+C content of the DNA was 32.0 mol%. The polar lipids of strain MO-SEDI were phosphatidylglycerol, phosphatidyl lipids and unknown lipids. The major cellular fatty acids (>10 % of the total) were C, Cω9 and C dimethyl aldehyde. Comparative sequence analysis of the 16S rRNA gene showed that strain MO-SEDI was affiliated with the genus within the phylum . It was related most closely to the type strain of (94 % sequence similarity). Based on the phenotypic and genetic characteristics, strain MO-SEDI is considered to represent a novel species of the genus , for which the name sp. nov. is proposed. The type strain is MO-SEDI ( = JCM 17293 = DSM 24004).

摘要

从一个产甲烷微生物群落中分离出一种新型厌氧细菌MO-SEDI菌株,该群落最初取自日本下北半岛近海的海洋地下沉积物。细胞革兰氏染色阴性,无运动性,不形成芽孢,呈杆状,长0.4-1.4μm,宽0.4-0.6μm。细胞还能形成长达约11μm的长丝。该菌株在酵母提取物存在的情况下,能利用氨基酸(即缬氨酸、亮氨酸、异亮氨酸、蛋氨酸、甘氨酸、苯丙氨酸、色氨酸、赖氨酸和精氨酸)、丙酮酸和松三糖生长。在4-37°C(最适温度为30°C)、pH值6.0和8.5(最适pH值为7.0-7.5)以及0-60g/L NaCl(最适为20g NaCl/L)的条件下可观察到生长。DNA的G+C含量为32.0mol%。MO-SEDI菌株的极性脂质为磷脂酰甘油、磷脂脂质和未知脂质。主要细胞脂肪酸(占总量的>10%)为C、Cω9和C二甲基醛。16S rRNA基因的比较序列分析表明,MO-SEDI菌株隶属于门内的属。它与的模式菌株关系最为密切(序列相似性为94%)。基于表型和遗传特征,MO-SEDI菌株被认为代表了属的一个新物种,为此提出新种名sp. nov.。模式菌株为MO-SEDI(=JCM 17293=DSM 24004)。

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