• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

对青藏高原裂腹鱼(双须叶须鱼)促红细胞生成素的分析表明,其在低氧环境中具有增强的细胞保护功能。

Analysis of the erythropoietin of a Tibetan Plateau schizothoracine fish (Gymnocypris dobula) reveals enhanced cytoprotection function in hypoxic environments.

作者信息

Xu Qianghua, Zhang Chi, Zhang Dongsheng, Jiang Huapeng, Peng Sihua, Liu Yang, Zhao Kai, Wang Congcong, Chen Liangbiao

机构信息

Key Laboratory of Sustainable Exploitation of Oceanic Fisheries Resources, Ministry of Education, College of Marine Sciences, Shanghai Ocean University, Shanghai, China.

Collaborative Innovation Center for Distant-water Fisheries, Shanghai, China.

出版信息

BMC Evol Biol. 2016 Jan 15;16:11. doi: 10.1186/s12862-015-0581-0.

DOI:10.1186/s12862-015-0581-0
PMID:26768152
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4714423/
Abstract

BACKGROUND

Erythropoietin (EPO) is a glycoprotein hormone that plays a principal regulatory role in erythropoiesis and initiates cell homeostatic responses to environmental challenges. The Qinghai-Tibet Plateau is a natural laboratory for hypoxia adaptation. Gymnocypris dobula is a highly specialized plateau schizothoracine fish that is restricted to > 4500 m high-altitude freshwater rivers and ponds in the Qinghai-Tibet Plateau. The role of EPO in the adaptation of schizothoracine fish to hypoxia is unknown.

RESULTS

The EPO and EPO receptor genes from G. dobula and four other schizothoracine fish from various altitudinal habitats were characterized. Schizothoracine EPOs are predicted to possess 2-3 N-glycosylation (NGS) sites, 4-5 casein kinase II phosphorylation (CK2) sites, 1-2 protein kinase C (PKC) phosphorylation sites, and four conserved cysteine residues within four helical domains, with variations in the numbers of NGS and CK2 sites in G. dobula. PAML analysis indicated a d N/d S value (ω) = 1.112 in the G. dobula lineage, and a few amino acids potentially under lineage-specific positive selection were detected within the G. dobula EPO. Similarly, EPO receptors of the two high-altitude schizothoracines (G. dobula and Ptychobarbus kaznakovi), were found to be statistically on the border of positive selection using the branch-site model (P-value = 0.096), and some amino acids located in the ligand-binding domain and the fibronectin type III domain were identified as potentially positive selection sites. Tissue EPO expression profiling based on transcriptome sequencing of three schizothoracines (G. dobula, Schizothorax nukiangensis Tsao, and Schizothorax prenanti) showed significant upregulation of EPO expression in the brain and less significantly in the gill of G. dobula. The elevated expression together with the rapid evolution of the EPO gene in G. dobula suggested a possible role for EPO in adaptation to hypoxia. To test this hypothesis, Gd-EPO and Sp-EPO were cloned into an expression vector and transfected into the cultured cell line 293 T. Significantly higher cell viability was observed in cells transfected with Gd-EPO than cells harboring Sp-EPO when challenged by hypoxia.

CONCLUSION

The deduced EPO proteins of the schizothoracine fish contain characteristic structures and important domains similar to EPOs from other taxa. The presence of potentially positive selection sites in both EPO and EPOR in G. dobula suggest possible adaptive evolution in the ligand-receptor binding activity of the EPO signaling cascade in G. dobula. Functional study indicated that the EPO from high-altitude schizothoracine species demonstrated features of hypoxic adaptation by reducing toxic effects or improving cell survival when expressed in cultured cells, providing evidence of molecular adaptation to hypoxic conditions in the Qinghai-Tibet Plateau.

摘要

背景

促红细胞生成素(EPO)是一种糖蛋白激素,在红细胞生成中起主要调节作用,并启动细胞对环境挑战的稳态反应。青藏高原是缺氧适应的天然实验室。双须叶须鱼是一种高度特化的高原裂腹鱼,仅分布于青藏高原海拔>4500米的高海拔淡水河流和池塘。EPO在裂腹鱼适应缺氧中的作用尚不清楚。

结果

对双须叶须鱼以及其他四种来自不同海拔栖息地的裂腹鱼的EPO和EPO受体基因进行了表征。预测裂腹鱼EPO具有2 - 3个N - 糖基化(NGS)位点、4 - 5个酪蛋白激酶II磷酸化(CK2)位点、1 - 2个蛋白激酶C(PKC)磷酸化位点,并且在四个螺旋结构域内有四个保守的半胱氨酸残基,双须叶须鱼的NGS和CK2位点数量存在差异。PAML分析表明双须叶须鱼谱系中的dN/dS值(ω)= 1.112,并且在双须叶须鱼EPO中检测到一些可能处于谱系特异性正选择下的氨基酸。同样,使用分支位点模型发现两种高海拔裂腹鱼(双须叶须鱼和拉萨裂腹鱼)的EPO受体在统计学上处于正选择的边界(P值 = 0.096),并且位于配体结合域和纤连蛋白III型域中的一些氨基酸被鉴定为潜在的正选择位点。基于三种裂腹鱼(双须叶须鱼、怒江裂腹鱼和齐口裂腹鱼)转录组测序的组织EPO表达谱分析表明,双须叶须鱼脑中EPO表达显著上调,鳃中上调程度较小。双须叶须鱼中EPO基因的高表达及其快速进化表明EPO在适应缺氧中可能发挥作用。为了验证这一假设,将Gd - EPO和Sp - EPO克隆到表达载体中并转染到培养的293T细胞系中。在缺氧刺激下,转染Gd - EPO的细胞比转染Sp - EPO的细胞具有显著更高的细胞活力。

结论

裂腹鱼推导的EPO蛋白含有与其他类群EPO相似的特征结构和重要结构域。双须叶须鱼的EPO和EPOR中潜在正选择位点的存在表明双须叶须鱼EPO信号级联的配体 - 受体结合活性可能发生了适应性进化。功能研究表明,高海拔裂腹鱼物种的EPO在培养细胞中表达时通过降低毒性作用或提高细胞存活率表现出缺氧适应特征,为青藏高原缺氧条件下的分子适应提供了证据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0cca/4714423/cd015266cac4/12862_2015_581_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0cca/4714423/ea6cf2b86392/12862_2015_581_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0cca/4714423/9623d81fed26/12862_2015_581_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0cca/4714423/35d194367c93/12862_2015_581_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0cca/4714423/2e28df5131c4/12862_2015_581_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0cca/4714423/f1d1ffb132b8/12862_2015_581_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0cca/4714423/de5f22c33c1f/12862_2015_581_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0cca/4714423/cd015266cac4/12862_2015_581_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0cca/4714423/ea6cf2b86392/12862_2015_581_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0cca/4714423/9623d81fed26/12862_2015_581_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0cca/4714423/35d194367c93/12862_2015_581_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0cca/4714423/2e28df5131c4/12862_2015_581_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0cca/4714423/f1d1ffb132b8/12862_2015_581_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0cca/4714423/de5f22c33c1f/12862_2015_581_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0cca/4714423/cd015266cac4/12862_2015_581_Fig7_HTML.jpg

相似文献

1
Analysis of the erythropoietin of a Tibetan Plateau schizothoracine fish (Gymnocypris dobula) reveals enhanced cytoprotection function in hypoxic environments.对青藏高原裂腹鱼(双须叶须鱼)促红细胞生成素的分析表明,其在低氧环境中具有增强的细胞保护功能。
BMC Evol Biol. 2016 Jan 15;16:11. doi: 10.1186/s12862-015-0581-0.
2
Hypoxia-inducible factor 1α from a high-altitude fish enhances cytoprotection and elevates nitric oxide production in hypoxic environment.高海拔鱼类的缺氧诱导因子 1α 增强了细胞保护作用,并提高了低氧环境中的一氧化氮产量。
Fish Physiol Biochem. 2020 Feb;46(1):39-49. doi: 10.1007/s10695-019-00694-7. Epub 2019 Oct 8.
3
Characterization of EPO H131S as a key mutation site in the hypoxia-adaptive evolution of Gymnocypris dobula.EPO H131S 作为 Gymnocypris dobula 低氧适应进化中的关键突变位点的特征。
Fish Physiol Biochem. 2022 Jun;48(3):723-733. doi: 10.1007/s10695-022-01080-6. Epub 2022 May 13.
4
Analysis of hypoxia-inducible factor alpha polyploidization reveals adaptation to Tibetan Plateau in the evolution of schizothoracine fish.缺氧诱导因子 alpha 多倍体分析揭示了青藏高原在鲱科鱼类进化中的适应。
BMC Evol Biol. 2014 Aug 28;14:192. doi: 10.1186/s12862-014-0192-1.
5
Molecular evolution of myoglobin in the Tibetan Plateau endemic schizothoracine fish (Cyprinidae, Teleostei) and tissue-specific expression changes under hypoxia.青藏高原特有裂腹鱼(鲤科,硬骨鱼纲)肌红蛋白的分子进化及低氧条件下的组织特异性表达变化
Fish Physiol Biochem. 2018 Apr;44(2):557-571. doi: 10.1007/s10695-017-0453-1. Epub 2017 Dec 11.
6
Genetic Adaptation of Schizothoracine Fish to the Phased Uplifting of the Qinghai-Tibetan Plateau.裂腹鱼类对青藏高原阶段性隆升的遗传适应
G3 (Bethesda). 2017 Apr 3;7(4):1267-1276. doi: 10.1534/g3.116.038406.
7
Predicted structural change in erythropoietin of plateau zokors--adaptation to high altitude.高原鼢鼠促红细胞生成素的结构预测变化——对高海拔的适应。
Gene. 2012 Jun 15;501(2):206-12. doi: 10.1016/j.gene.2012.02.045. Epub 2012 Mar 8.
8
Mitochondrial cytochrome b sequence variation and phylogenetics of the highly specialized Schizothoracine fishes (Teleostei: Cyprinidae) in the Qinghai-Tibet plateau.青藏高原特化裂腹鱼类(硬骨鱼纲:鲤科)线粒体细胞色素b序列变异与系统发育学
Biochem Genet. 2006 Jun;44(5-6):270-85. doi: 10.1007/s10528-006-9022-5. Epub 2006 Aug 29.
9
Adaptive Evolution of the Gene and Scales Loss in Schizothoracine Fishes in Response to Uplift of the Tibetan Plateau.高原隆升驱动高原鳅属鱼类基因和鳞片适应性进化
Int J Mol Sci. 2018 Sep 27;19(10):2953. doi: 10.3390/ijms19102953.
10
Characterization of the complete mitogenome of (Günther, 1868) (Cypriniformes: Cyprinidae).(1868年,京特)的线粒体基因组全序列特征分析(鲤形目:鲤科)
Mitochondrial DNA B Resour. 2022 Jan 30;7(1):297-299. doi: 10.1080/23802359.2021.1972051. eCollection 2022.

引用本文的文献

1
Expression and Variations in Associated with Oxygen Metabolism in Tibetan Sheep.藏绵羊中与氧代谢相关的表达及变异
Animals (Basel). 2024 Feb 6;14(4):535. doi: 10.3390/ani14040535.
2
Measurement of Fitness and Predatory Ability of Four Predatory Mite Species in Tibetan Plateau under Laboratory Conditions.实验室条件下青藏高原四种捕食螨的适合度及捕食能力测定
Insects. 2024 Feb 6;15(2):119. doi: 10.3390/insects15020119.
3
Population structure and adaptability analysis of Schizothorax o'connori based on whole-genome resequencing.

本文引用的文献

1
Comparative phylogeography of the plateau zokor (Eospalax baileyi) and its host-associated flea (Neopsylla paranoma) in the Qinghai-Tibet Plateau.青藏高原高原鼢鼠(甘肃鼢鼠)及其宿主相关跳蚤(近瘤新蚤)的比较系统地理学
BMC Evol Biol. 2014 Aug 17;14:180. doi: 10.1186/s12862-014-0180-5.
2
Oxidative stress induces caveolin 1 degradation and impairs caveolae functions in skeletal muscle cells.氧化应激诱导小窝蛋白1降解并损害骨骼肌细胞中的小窝功能。
PLoS One. 2015 Mar 23;10(3):e0122654. doi: 10.1371/journal.pone.0122654. eCollection 2015.
3
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
基于全基因组重测序的四川裂腹鱼种群结构与适应性分析。
BMC Genomics. 2024 Feb 6;25(1):145. doi: 10.1186/s12864-024-09975-9.
4
The complete mitochondrial genome of a new species of the genus from Sichuan, China (Cypriniformes: Cyprinidae).来自中国四川的该属一新物种的完整线粒体基因组(鲤形目:鲤科)。
Mitochondrial DNA B Resour. 2023 Dec 8;8(12):1356-1359. doi: 10.1080/23802359.2023.2288437. eCollection 2023.
5
Molecular Mechanisms Underlying Vertebrate Adaptive Evolution: A Systematic Review.脊椎动物适应性进化的分子机制:系统评价。
Genes (Basel). 2023 Feb 5;14(2):416. doi: 10.3390/genes14020416.
6
Characterization of EPO H131S as a key mutation site in the hypoxia-adaptive evolution of Gymnocypris dobula.EPO H131S 作为 Gymnocypris dobula 低氧适应进化中的关键突变位点的特征。
Fish Physiol Biochem. 2022 Jun;48(3):723-733. doi: 10.1007/s10695-022-01080-6. Epub 2022 May 13.
7
Integrated Metabolomics and Transcriptomic Analysis of Hepatopancreas in Different Living Status in Response to Hypoxia.不同生存状态下肝胰腺对缺氧反应的代谢组学与转录组学整合分析
Antioxidants (Basel). 2021 Dec 24;11(1):36. doi: 10.3390/antiox11010036.
8
Genomic Signature of Shifts in Selection and Alkaline Adaptation in Highland Fish.高海拔鱼类选择和碱性适应中选择压力变化的基因组特征。
Genome Biol Evol. 2021 May 7;13(5). doi: 10.1093/gbe/evab086.
9
Analysis of Multiplicity of Hypoxia-Inducible Factors in the Evolution of Fish (Osteichthyes: Nemacheilinae) Reveals Hypoxic Environments Adaptation to Tibetan Plateau.鱼类(硬骨鱼纲:条鳅亚科)进化过程中缺氧诱导因子多样性分析揭示对青藏高原缺氧环境的适应
Front Genet. 2020 May 12;11:433. doi: 10.3389/fgene.2020.00433. eCollection 2020.
10
Hypoxia-inducible factor 1α from a high-altitude fish enhances cytoprotection and elevates nitric oxide production in hypoxic environment.高海拔鱼类的缺氧诱导因子 1α 增强了细胞保护作用,并提高了低氧环境中的一氧化氮产量。
Fish Physiol Biochem. 2020 Feb;46(1):39-49. doi: 10.1007/s10695-019-00694-7. Epub 2019 Oct 8.
使用DESeq2对RNA测序数据的倍数变化和离散度进行适度估计。
Genome Biol. 2014;15(12):550. doi: 10.1186/s13059-014-0550-8.
4
HTSeq--a Python framework to work with high-throughput sequencing data.HTSeq——一个用于处理高通量测序数据的Python框架。
Bioinformatics. 2015 Jan 15;31(2):166-9. doi: 10.1093/bioinformatics/btu638. Epub 2014 Sep 25.
5
Analysis of hypoxia-inducible factor alpha polyploidization reveals adaptation to Tibetan Plateau in the evolution of schizothoracine fish.缺氧诱导因子 alpha 多倍体分析揭示了青藏高原在鲱科鱼类进化中的适应。
BMC Evol Biol. 2014 Aug 28;14:192. doi: 10.1186/s12862-014-0192-1.
6
Hypoxia adaptations in the grey wolf (Canis lupus chanco) from Qinghai-Tibet Plateau.青藏高原狼(藏狼,Canis lupus chanco)的低氧适应
PLoS Genet. 2014 Jul 31;10(7):e1004466. doi: 10.1371/journal.pgen.1004466. eCollection 2014 Jul.
7
Erythropoietin-mediated protection of insect brain neurons involves JAK and STAT but not PI3K transduction pathways.促红细胞生成素介导的昆虫脑神经元保护涉及JAK和STAT,但不涉及PI3K转导途径。
Neuroscience. 2014 Jan 31;258:218-27. doi: 10.1016/j.neuroscience.2013.11.020. Epub 2013 Nov 21.
8
Scalable web services for the PSIPRED Protein Analysis Workbench.可扩展的 Web 服务,用于 PSIPRED 蛋白质分析工作平台。
Nucleic Acids Res. 2013 Jul;41(Web Server issue):W349-57. doi: 10.1093/nar/gkt381. Epub 2013 Jun 8.
9
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions.TopHat2:在存在插入、缺失和基因融合的情况下对转录组进行精确比对。
Genome Biol. 2013 Apr 25;14(4):R36. doi: 10.1186/gb-2013-14-4-r36.
10
Molecular and functional characterization of erythropoietin of the goldfish (Carassius auratus L.).金鱼(Carassius auratus L.)促红细胞生成素的分子与功能特性分析。
Dev Comp Immunol. 2013 Jun;40(2):148-57. doi: 10.1016/j.dci.2013.02.007. Epub 2013 Mar 5.