Meyer Benjamin, Guillot Benoît, Ruiz-Lopez Manuel F, Jelsch Christian, Genoni Alessandro
CNRS , Laboratoire SRSMC, UMR 7565, Vandoeuvre-lès-Nancy F-54506, France.
Université de Lorraine , Laboratoire SRSMC, UMR 7565, Vandoeuvre-lès-Nancy F-54506, France.
J Chem Theory Comput. 2016 Mar 8;12(3):1068-81. doi: 10.1021/acs.jctc.5b01008. Epub 2016 Feb 4.
Due to both technical and methodological difficulties, determining and analyzing charge densities of very large molecular systems represents a serious challenge that, in the crystallographers community, has been mainly tackled by observing that the so-called pseudoatoms of the electron density multipole expansions are reliably transferable from molecule to molecule. This has led to the construction of pseudoatoms databanks that have allowed successful refinements of crystallographic structures of macromolecules, while taking into account their corresponding reconstructed electron distributions. A recent alternative/complement to the previous approach is represented by techniques based on extremely localized molecular orbitals (ELMOs) that, due to their strict localization on small molecular fragments (e.g., atoms, bonds, and functional groups), are also in principle exportable from system to system. The ELMOs transferability has been already tested in detail, and, in this work, it has been compared to the one of the pseudoatoms. To accomplish this task, electron distributions obtained both through the transfer of pseudoatoms and through the transfer of extremely localized molecular orbitals have been analyzed, especially taking into account topological properties and similarity indexes. The obtained results indicate that all the considered reconstruction methods give completely reasonable and similar charge densities, and, consequently, the new ELMOs libraries will probably represent new useful tools not only for refining crystal structures but also for computing approximate electronic properties of very large molecules.
由于技术和方法上的困难,确定和分析非常大的分子系统的电荷密度是一项严峻的挑战,在晶体学界,这一挑战主要通过观察电子密度多极展开的所谓伪原子在分子间可靠转移来解决。这导致了伪原子数据库的构建,这些数据库能够成功地精修大分子的晶体结构,同时考虑到它们相应的重构电子分布。最近,一种基于极度局域化分子轨道(ELMO)的技术成为了之前方法的替代/补充,由于其严格局限于小分子片段(如原子、键和官能团),原则上也可在系统间转移。ELMO的可转移性已经得到了详细测试,在这项工作中,它与伪原子的可转移性进行了比较。为完成这项任务,对通过伪原子转移和极度局域化分子轨道转移获得的电子分布进行了分析,尤其考虑了拓扑性质和相似性指标。所得结果表明,所有考虑的重构方法都给出了完全合理且相似的电荷密度,因此,新的ELMO库可能不仅是精修晶体结构的新有用工具,也是计算非常大分子近似电子性质的新有用工具。