Duangmal Kannika, Suksaard Paweena, Pathom-Aree Wasu, Mingma Ratchanee, Matsumoto Atsuko, Takahashi Yoko
Center for Advanced Studies in Tropical Natural Resources, NRU-KU, Kasetsart University, Chatuchak, Bangkok 10900, Thailand.
Department of Microbiology, Faculty of Science, Kasetsart University, Chatuchak, Bangkok 10900, Thailand.
Int J Syst Evol Microbiol. 2016 Apr;66(4):1660-1665. doi: 10.1099/ijsem.0.000926. Epub 2016 Jan 26.
The taxonomic position of the halophilic actinobacterial strain, HS05-03T, isolated from solar saltern soil, was determined using a polyphasic approach. Phylogenetic analysis based on the 16S rRNA gene sequence of the strain showed that it formed a distinct evolutionary lineage in the genus Actinopolyspora. The organism was most closely related to the type strains of the species Actinopolyspora xinjiangensis (98.0% similarity), Actinopolyspora righensis (97.9% similarity), Actinopolyspora lacussalsi (97.9% similarity) and Actinopolyspora erythraea (97.8% similarity). The whole-organism hydrolysates contained meso-diaminopimelic acid, arabinose, galactose and ribose. The predominant menaquinones were found to be MK-9(H4) and MK-10(H4). The acyl type of the peptidoglycan was N-acetyl. The diagnostic phospholipid detected was phosphatidylcholine. The predominant cellular fatty acids were iso-C16 : 0, anteiso-C17:0 and iso-C15:0. The G+C content of the genomic DNA was 69.9 mol%. DNA-DNA hybridization values between strain HS05-03T and the type strains of the most closely related species were below the 70 % threshold. On the basis of the phenotypic and genotypic data, it is proposed that strain HS05-03T represents a novel species of the genus Actinopolyspora, with the name Actinopolyspora salinaria sp. nov. The type strain is HS05-03T (=BCC 51286T=NBRC 109078T).
采用多相分类法确定了从盐田土壤中分离出的嗜盐放线菌菌株HS05-03T的分类地位。基于该菌株16S rRNA基因序列的系统发育分析表明,它在放线多孢菌属中形成了一个独特的进化分支。该菌株与新疆放线多孢菌(相似度98.0%)、坚硬放线多孢菌(相似度97.9%)、盐湖放线多孢菌(相似度97.9%)和红霉放线多孢菌(相似度97.8%)的模式菌株关系最为密切。全细胞水解产物含有内消旋二氨基庚二酸、阿拉伯糖、半乳糖和核糖。主要的甲基萘醌为MK-9(H4)和MK-10(H4)。肽聚糖的酰基类型为N-乙酰型。检测到的诊断性磷脂为磷脂酰胆碱。主要的细胞脂肪酸为异-C16 : 0、anteiso-C17:0和异-C15:0。基因组DNA的G+C含量为69.9 mol%。菌株HS05-03T与最密切相关物种的模式菌株之间的DNA-DNA杂交值低于70 %的阈值。基于表型和基因型数据,建议将菌株HS05-03T代表放线多孢菌属的一个新物种,命名为盐生放线多孢菌(Actinopolyspora salinaria sp. nov.)。模式菌株为HS05-03T(=BCC 51286T=NBRC 109078T)。