Brieke Clara, Kratzig Veronika, Peschke Madeleine, Cryle Max J
Department of Biomolecular Mechanisms, Max Planck Institute for Medical Research, Jahnstrasse 29, Heidelberg, 69120, Germany.
Methods Mol Biol. 2016;1401:85-102. doi: 10.1007/978-1-4939-3375-4_6.
The glycopeptide antibiotics are an important class of complex, medically relevant peptide natural products. Given that the production of such compounds all stems from in vivo biosynthesis, understanding the mechanisms of the natural assembly system--consisting of a nonribosomal-peptide synthetase machinery (NRPS) and further modifying enzymes--is vital. In order to address the later steps of peptide biosynthesis, which are catalyzed by Cytochrome P450s that interact with the peptide-producing nonribosomal peptide synthetase, peptide substrates are required: these peptides must also be in a form that can be conjugated to carrier protein domains of the nonribosomal peptide synthetase machinery. Here, we describe a practical and effective route for the solid phase synthesis of glycopeptide antibiotic precursor peptides as their Coenzyme A (CoA) conjugates to allow enzymatic conjugation to carrier protein domains. This route utilizes Fmoc-chemistry suppressing epimerization of racemization-prone aryl glycine derivatives and affords high yields and excellent purities, requiring only a single step of simple solid phase extraction for chromatographic purification. With this, comprehensive investigations of interactions between various NRPS-bound substrates and Cytochrome P450s are enabled.
糖肽类抗生素是一类重要的、与医学相关的复杂肽天然产物。鉴于此类化合物的生产均源于体内生物合成,了解由非核糖体肽合成酶机制(NRPS)和其他修饰酶组成的天然组装系统的机制至关重要。为了研究由细胞色素P450催化的肽生物合成后期步骤,这些细胞色素P450与产生肽的非核糖体肽合成酶相互作用,需要肽底物:这些肽还必须是能够与非核糖体肽合成酶机制的载体蛋白结构域缀合的形式。在此,我们描述了一种实用且有效的固相合成糖肽类抗生素前体肽的方法,将其合成为辅酶A(CoA)缀合物,以便酶促缀合到载体蛋白结构域。该方法利用Fmoc化学抑制易发生消旋化的芳基甘氨酸衍生物的差向异构化,产率高且纯度优异,仅需一步简单的固相萃取进行色谱纯化。由此,可以对各种与NRPS结合的底物和细胞色素P450之间的相互作用进行全面研究。