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来自芽殖酵母的小核RNA:系统发育比较揭示了广泛的大小变异。

Small nuclear RNAs from budding yeasts: phylogenetic comparisons reveal extensive size variation.

作者信息

Roiha H, Shuster E O, Brow D A, Guthrie C

机构信息

Department of Biochemistry and Biophysics, University of California, San Francisco 94143.

出版信息

Gene. 1989 Oct 15;82(1):137-44. doi: 10.1016/0378-1119(89)90038-3.

DOI:10.1016/0378-1119(89)90038-3
PMID:2684769
Abstract

Homologues of each of the five metazoan snRNAs required for pre-mRNA splicing have recently been identified in the budding yeast Saccharomyces cerevisiae on the basis of shared structural elements and evidence of similar roles during splicing. However, the spliceosomal snRNAs in this yeast are up to six times larger than their mammalian counterparts, suggesting that they may perform additional, perhaps species-specific, functions in the pre-mRNA processing pathway. We have undertaken a survey of 23 other budding yeasts to determine whether increased snRNA size is unique to Sacch. cerevisiae and, if not, to look for common structural motifs among homologous snRNAs. Our studies reveal that the spliceosomal snRNAs exhibit a surprising degree of size variation among these species. Furthermore, partial sequence analysis has identified a specific domain in the U6 snRNA which accounts for the observed size polymorphisms.

摘要

最近,基于共同的结构元件以及剪接过程中类似作用的证据,在芽殖酵母酿酒酵母中鉴定出了前体mRNA剪接所需的五种后生动物小核RNA(snRNA)中的每一种的同源物。然而,这种酵母中的剪接体snRNA比其哺乳动物对应物大六倍,这表明它们可能在前体mRNA加工途径中执行额外的、也许是物种特异性的功能。我们对另外23种芽殖酵母进行了一项调查,以确定snRNA大小增加是否是酿酒酵母特有的,如果不是,则寻找同源snRNA之间的共同结构基序。我们的研究表明,剪接体snRNA在这些物种中表现出惊人程度的大小变异。此外,部分序列分析在U6 snRNA中鉴定出一个特定结构域,该结构域解释了观察到的大小多态性。

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1
Small nuclear RNAs from budding yeasts: phylogenetic comparisons reveal extensive size variation.来自芽殖酵母的小核RNA:系统发育比较揭示了广泛的大小变异。
Gene. 1989 Oct 15;82(1):137-44. doi: 10.1016/0378-1119(89)90038-3.
2
An essential snRNA from S. cerevisiae has properties predicted for U4, including interaction with a U6-like snRNA.来自酿酒酵母的一种必需小核仁RNA具有预测的U4的特性,包括与一种类似U6的小核仁RNA相互作用。
Cell. 1987 Aug 14;50(4):585-92. doi: 10.1016/0092-8674(87)90031-6.
3
Saccharomyces cerevisiae U1 small nuclear RNA secondary structure contains both universal and yeast-specific domains.酿酒酵母U1小核RNA二级结构包含通用结构域和酵母特异性结构域。
Proc Natl Acad Sci U S A. 1990 Jan;87(2):851-5. doi: 10.1073/pnas.87.2.851.
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U2 RNA from yeast is unexpectedly large and contains homology to vertebrate U4, U5, and U6 small nuclear RNAs.酵母中的U2 RNA出人意料地大,并且与脊椎动物的U4、U5和U6小核RNA具有同源性。
Cell. 1986 Oct 10;47(1):49-59. doi: 10.1016/0092-8674(86)90365-x.
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Spliceosomal RNA U6 is remarkably conserved from yeast to mammals.剪接体RNA U6从酵母到哺乳动物都具有显著的保守性。
Nature. 1988 Jul 21;334(6179):213-8. doi: 10.1038/334213a0.
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S. cerevisiae U1 RNA is large and has limited primary sequence homology to metazoan U1 snRNA.酿酒酵母U1 RNA较大,且与后生动物U1 snRNA的一级序列同源性有限。
Cell. 1987 Aug 14;50(4):593-602. doi: 10.1016/0092-8674(87)90032-8.
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Evolution of small nuclear RNAs in S. cerevisiae, C. albicans, and other hemiascomycetous yeasts.酿酒酵母、白色念珠菌及其他半子囊菌酵母中小核RNA的进化
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The conserved central domain of yeast U6 snRNA: importance of U2-U6 helix Ia in spliceosome assembly.酵母U6小核RNA的保守中央结构域:U2-U6螺旋Ia在剪接体组装中的重要性
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A tertiary interaction detected in a human U2-U6 snRNA complex assembled in vitro resembles a genetically proven interaction in yeast.在体外组装的人源U2-U6 snRNA复合物中检测到的三级相互作用类似于酵母中经遗传学验证的相互作用。
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Domains of yeast U4 spliceosomal RNA required for PRP4 protein binding, snRNP-snRNP interactions, and pre-mRNA splicing in vivo.体内PRP4蛋白结合、小核核糖核蛋白颗粒(snRNP)-snRNP相互作用和前体信使核糖核酸(pre-mRNA)剪接所需的酵母U4剪接体RNA结构域。
Genes Dev. 1990 Jul;4(7):1185-96. doi: 10.1101/gad.4.7.1185.

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