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通过DNA条形码技术对齿胸叩甲亚科(鞘翅目:叩甲科)物种多样性的重新评估

Reassessment of Species Diversity of the Subfamily Denticollinae (Coleoptera: Elateridae) through DNA Barcoding.

作者信息

Han Taeman, Lee Wonhoon, Lee Seunghwan, Park In Gyun, Park Haechul

机构信息

Applied Entomology Division, Department of Agricultural Biology, National Academy of Agricultural Science, Wansan-gu, Jeonju, Korea.

Animal and Plant Quarantine Agency, Manan-gu, Anyang-si, Gyeonggi-do, Korea.

出版信息

PLoS One. 2016 Feb 5;11(2):e0148602. doi: 10.1371/journal.pone.0148602. eCollection 2016.

Abstract

The subfamily Denticollinae is a taxonomically diverse group in the family Elateridae. Denticollinae includes many morphologically similar species and crop pests, as well as many undescribed species at each local fauna. To construct a rapid and reliable identification system for this subfamily, the effectiveness of molecular species identification was assessed based on 421 cytochrome c oxidase subunit I (COI) sequences of 84 morphologically identified species. Among the 84 morphospecies, molecular species identification of 60 species (71.4%) was consistent with their morphological identifications. Six cryptic and/or pseudocryptic species with large genetic divergence (>5%) were confirmed by their sympatric or allopatric distributions. However, 18 species, including a subspecies, had ambiguous genetic distances and shared overlapping intra- and interspecific genetic distances (range: 2.12%-3.67%) suggesting incomplete lineage sorting, introgression of mitochondrial genome, or affection by endosymbionts, such as Wolbachia infection, between species and simple genetic variation within species. In this study, we propose a conservative threshold of 3.6% for convenient molecular operational taxonomic unit (MOTU) identification in the subfamily Denticollinae based on the results of pairwise genetic distances analyses using neighbor-joining, mothur, Automatic Barcode Gap Discovery analysis, and tree-based species delimitation by Poisson Tree Processes analysis. Using the 3.6% threshold, we identified 87 MOTUs and found 8 MOTUs in the interval between 2.5% to 3.5%. Evaluation of MOTUs identified in this range requires integrative species delimitation, including review of morphological and ecological differences as well as sensitive genetic markers. From this study, we confirmed that COI sequence is useful for reassessing species diversity for polymorphic and polytypic species occurring in sympatric and allopatric distributions, and for a single species having an extensively large habitat.

摘要

牙甲亚科是叩甲科中一个分类学上多样化的类群。牙甲亚科包括许多形态相似的物种和农作物害虫,以及各地动物区系中许多未被描述的物种。为了构建一个快速可靠的该亚科鉴定系统,基于84个形态学鉴定物种的421条细胞色素c氧化酶亚基I(COI)序列,评估了分子物种鉴定的有效性。在这84个形态种中,60个物种(71.4%)的分子物种鉴定与其形态学鉴定一致。通过同域或异域分布确认了6个具有较大遗传差异(>5%)的隐种和/或假隐种。然而,包括1个亚种在内的18个物种具有模糊的遗传距离,种内和种间遗传距离重叠(范围:2.12%-3.67%),这表明存在不完全谱系分选、线粒体基因组渐渗,或受共生菌(如沃尔巴克氏体感染)影响,以及种内简单的遗传变异。在本研究中,基于使用邻接法、mothur、自动条形码间隙发现分析和泊松树过程分析进行的成对遗传距离分析结果,我们提出了一个3.6%的保守阈值,以便在牙甲亚科中方便地鉴定分子操作分类单元(MOTU)。使用3.6%的阈值,我们鉴定出87个MOTU,并在2.5%至3.5%的区间内发现了8个MOTU。对在此范围内鉴定出的MOTU进行评估需要综合物种界定,包括审查形态和生态差异以及敏感的遗传标记。从本研究中,我们证实COI序列可用于重新评估同域和异域分布的多态和多型物种以及具有广泛大栖息地的单个物种的物种多样性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3db1/4744053/8fccb2bbb160/pone.0148602.g001.jpg

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