Werbowy Olesia, Kaczorowski Tadeusz
Department of Microbiology, University of Gdansk, Wita Stwosza 59, Gdansk, Poland.
PLoS One. 2016 Feb 5;11(2):e0148355. doi: 10.1371/journal.pone.0148355. eCollection 2016.
Type II restriction-modification systems are ubiquitous in prokaryotes. Some of them are present in naturally occurring plasmids, which may facilitate the spread of these systems in bacterial populations by horizontal gene transfer. However, little is known about the routes of their dissemination. As a model to study this, we have chosen an Escherichia coli natural plasmid pEC156 that carries the EcoVIII restriction modification system. The presence of this system as well as the cis-acting cer site involved in resolution of plasmid multimers determines the stable maintenance of pEC156 not only in Escherichia coli but also in other enterobacteria. We have shown that due to the presence of oriT-type F and oriT-type R64 loci it is possible to mobilize pEC156 by conjugative plasmids (F and R64, respectively). The highest mobilization frequency was observed when pEC156-derivatives were transferred between Escherichia coli strains, Enterobacter cloacae and Citrobacter freundii representing coliform bacteria. We found that a pEC156-derivative with a functional EcoVIII restriction-modification system was mobilized in enterobacteria at a frequency lower than a plasmid lacking this system. In addition, we found that bacteria that possess the EcoVIII restriction-modification system can efficiently release plasmid content to the environment. We have shown that E. coli cells can be naturally transformed with pEC156-derivatives, however, with low efficiency. The transformation protocol employed neither involved chemical agents (e.g. CaCl2) nor temperature shift which could induce plasmid DNA uptake.
II型限制修饰系统在原核生物中普遍存在。其中一些存在于天然质粒中,这可能通过水平基因转移促进这些系统在细菌群体中的传播。然而,关于它们的传播途径知之甚少。作为研究这一问题的模型,我们选择了携带EcoVIII限制修饰系统的大肠杆菌天然质粒pEC156。该系统的存在以及参与质粒多聚体解离的顺式作用cer位点决定了pEC156不仅在大肠杆菌中,而且在其他肠杆菌中都能稳定维持。我们已经表明,由于存在oriT型F和oriT型R64位点,通过接合质粒(分别为F和R64)可以动员pEC156。当pEC156衍生物在代表大肠菌群的大肠杆菌菌株、阴沟肠杆菌和弗氏柠檬酸杆菌之间转移时,观察到最高的动员频率。我们发现,具有功能性EcoVIII限制修饰系统的pEC156衍生物在肠杆菌中的动员频率低于缺乏该系统的质粒。此外,我们发现拥有EcoVIII限制修饰系统的细菌可以有效地将质粒内容物释放到环境中。我们已经表明,大肠杆菌细胞可以被pEC156衍生物自然转化,然而,效率很低。所采用的转化方案既不涉及化学试剂(如CaCl2),也不涉及可诱导质粒DNA摄取的温度变化。