Suppr超能文献

舞动的蛋白质云团:内在无序蛋白质的奇异生物学与混沌物理学

Dancing Protein Clouds: The Strange Biology and Chaotic Physics of Intrinsically Disordered Proteins.

作者信息

Uversky Vladimir N

机构信息

From the Department of Molecular Medicine, USF Health Byrd Alzheimer's Research Institute, Morsani College of Medicine, University of South Florida, Tampa, Florida 33612, the Biological Sciences Department, Faculty of Science, King Abdulaziz University, Jeddah 21589, Saudi Arabia, the Institute for Biological Instrumentation, Russian Academy of Sciences, 142292 Pushchino, Moscow Region, Russia, and the Laboratory of Structural Dynamics, Stability and Folding of Proteins, Institute of Cytology, Russian Academy of Sciences, 194064 St. Petersburg, Russian Federation

出版信息

J Biol Chem. 2016 Mar 25;291(13):6681-8. doi: 10.1074/jbc.R115.685859. Epub 2016 Feb 5.

Abstract

Biologically active but floppy proteins represent a new reality of modern protein science. These intrinsically disordered proteins (IDPs) and hybrid proteins containing ordered and intrinsically disordered protein regions (IDPRs) constitute a noticeable part of any given proteome. Functionally, they complement ordered proteins, and their conformational flexibility and structural plasticity allow them to perform impossible tricks and be engaged in biological activities that are inaccessible to well folded proteins with their unique structures. The major goals of this minireview are to show that, despite their simplified amino acid sequences, IDPs/IDPRs are complex entities often resembling chaotic systems, are structurally and functionally heterogeneous, and can be considered an important part of the structure-function continuum. Furthermore, IDPs/IDPRs are everywhere, and are ubiquitously engaged in various interactions characterized by a wide spectrum of binding scenarios and an even wider spectrum of structural and functional outputs.

摘要

具有生物活性但结构松散的蛋白质代表了现代蛋白质科学的一个新领域。这些内在无序蛋白质(IDP)以及包含有序和内在无序蛋白质区域(IDPR)的杂合蛋白质在任何给定的蛋白质组中都占据显著比例。在功能上,它们补充了有序蛋白质的功能,其构象灵活性和结构可塑性使它们能够施展不可思议的技巧,并参与具有独特结构的折叠良好的蛋白质所无法进行的生物活动。本综述的主要目的是表明,尽管IDP/IDPR的氨基酸序列简单,但它们是复杂的实体,常常类似于混沌系统,在结构和功能上具有异质性,并且可以被视为结构-功能连续体的重要组成部分。此外,IDP/IDPR无处不在,广泛参与各种相互作用,这些相互作用具有广泛的结合模式以及更加广泛的结构和功能输出。

相似文献

1
Dancing Protein Clouds: The Strange Biology and Chaotic Physics of Intrinsically Disordered Proteins.
J Biol Chem. 2016 Mar 25;291(13):6681-8. doi: 10.1074/jbc.R115.685859. Epub 2016 Feb 5.
2
Modulation of Intrinsically Disordered Protein Function by Post-translational Modifications.
J Biol Chem. 2016 Mar 25;291(13):6696-705. doi: 10.1074/jbc.R115.695056. Epub 2016 Feb 5.
3
Functions of short lifetime biological structures at large: the case of intrinsically disordered proteins.
Brief Funct Genomics. 2020 Jan 22;19(1):60-68. doi: 10.1093/bfgp/ely023.
4
Intrinsic Disorder, Protein-Protein Interactions, and Disease.
Adv Protein Chem Struct Biol. 2018;110:85-121. doi: 10.1016/bs.apcsb.2017.06.005. Epub 2017 Jul 24.
5
Introduction to the Thematic Minireview Series on Intrinsically Disordered Proteins.
J Biol Chem. 2016 Mar 25;291(13):6679-80. doi: 10.1074/jbc.R116.719930. Epub 2016 Feb 5.
6
Intrinsically disordered proteins in crowded milieu: when chaos prevails within the cellular gumbo.
Cell Mol Life Sci. 2018 Nov;75(21):3907-3929. doi: 10.1007/s00018-018-2894-9. Epub 2018 Jul 31.
8
Molecular Recognition Features in Zika Virus Proteome.
J Mol Biol. 2018 Aug 3;430(16):2372-2388. doi: 10.1016/j.jmb.2017.10.018. Epub 2017 Nov 7.
9
Dynamic Protein Interaction Networks and New Structural Paradigms in Signaling.
Chem Rev. 2016 Jun 8;116(11):6424-62. doi: 10.1021/acs.chemrev.5b00548. Epub 2016 Feb 29.
10
Proteins without unique 3D structures: biotechnological applications of intrinsically unstable/disordered proteins.
Biotechnol J. 2015 Mar;10(3):356-66. doi: 10.1002/biot.201400374. Epub 2014 Oct 6.

引用本文的文献

1
Hallmarks of cellular senescence: biology, mechanisms, regulations.
Exp Mol Med. 2025 Jul 10. doi: 10.1038/s12276-025-01480-7.
2
'Intelligent' proteins.
Cell Mol Life Sci. 2025 Jun 14;82(1):239. doi: 10.1007/s00018-025-05770-1.
3
Successful prediction of LC8 binding to intrinsically disordered proteins sheds light on AlphaFold's black box.
Front Mol Biosci. 2025 Apr 23;12:1531793. doi: 10.3389/fmolb.2025.1531793. eCollection 2025.
6
IDP-Bert: Predicting Properties of Intrinsically Disordered Proteins Using Large Language Models.
J Phys Chem B. 2024 Dec 12;128(49):12030-12037. doi: 10.1021/acs.jpcb.4c02507. Epub 2024 Nov 25.
7
On the Roles of Protein Intrinsic Disorder in the Origin of Life and Evolution.
Life (Basel). 2024 Oct 15;14(10):1307. doi: 10.3390/life14101307.
8
Intrinsic Disorder and Other Malleable Arsenals of Evolved Protein Multifunctionality.
J Mol Evol. 2024 Dec;92(6):669-684. doi: 10.1007/s00239-024-10196-7. Epub 2024 Aug 30.
9
Protein Fold Usages in Ribosomes: Another Glance to the Past.
Int J Mol Sci. 2024 Aug 13;25(16):8806. doi: 10.3390/ijms25168806.
10
A Tiny Viral Protein, SARS-CoV-2-ORF7b: Functional Molecular Mechanisms.
Biomolecules. 2024 Apr 30;14(5):541. doi: 10.3390/biom14050541.

本文引用的文献

1
Polyvalent Interactions in Biological Systems: Implications for Design and Use of Multivalent Ligands and Inhibitors.
Angew Chem Int Ed Engl. 1998 Nov 2;37(20):2754-2794. doi: 10.1002/(SICI)1521-3773(19981102)37:20<2754::AID-ANIE2754>3.0.CO;2-3.
2
Transient disorder: Calcineurin as an example.
Intrinsically Disord Proteins. 2013 Sep 19;1(1):e26412. doi: 10.4161/idp.26412. eCollection 2013 Jan-Dec.
3
Can proteins be intrinsically disordered inside a membrane?
Intrinsically Disord Proteins. 2015 Mar 2;3(1):e984570. doi: 10.4161/21690707.2014.984570. eCollection 2015.
4
Fuzzy complexes: Specific binding without complete folding.
FEBS Lett. 2015 Sep 14;589(19 Pt A):2533-42. doi: 10.1016/j.febslet.2015.07.022. Epub 2015 Jul 27.
5
Entropic clocks in the service of electrical signaling: 'Ball and chain' mechanisms for ion channel inactivation and clustering.
FEBS Lett. 2015 Sep 14;589(19 Pt A):2441-7. doi: 10.1016/j.febslet.2015.06.010. Epub 2015 Jun 22.
6
The multifaceted roles of intrinsic disorder in protein complexes.
FEBS Lett. 2015 Sep 14;589(19 Pt A):2498-506. doi: 10.1016/j.febslet.2015.06.004. Epub 2015 Jun 11.
8
Intrinsically disordered proteins in cellular signalling and regulation.
Nat Rev Mol Cell Biol. 2015 Jan;16(1):18-29. doi: 10.1038/nrm3920.
9
Intrinsically disordered proteins as crucial constituents of cellular aqueous two phase systems and coacervates.
FEBS Lett. 2015 Jan 2;589(1):15-22. doi: 10.1016/j.febslet.2014.11.028. Epub 2014 Nov 29.
10
Polybivalency and disordered proteins in ordering macromolecular assemblies.
Semin Cell Dev Biol. 2015 Jan;37:20-5. doi: 10.1016/j.semcdb.2014.09.016. Epub 2014 Sep 27.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验